Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase II, large subunit, CTD

Term: IPR006569  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene30506 SustainPine v3.0 729
AutoFact: U2-associated protein SR140 [Arabidopsis thaliana] gb|AAK25922.1|AF360212_1 unknown protein [Arabidopsis thaliana] gb|AAK64118.1| unknown protein [Arabidopsis thaliana] gb|AED93395.1| U2-associated protein SR140 [Arabidopsis thaliana] 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene30745 SustainPine v3.0 217
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene30965 SustainPine v3.0 836
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 0.0
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutathione peroxidase 0.0
Complete
sp_v3.0_unigene31298 SustainPine v3.0 684
AutoFact: Glutathione peroxidase n=1 Tax=Candida glabrata CBS 138 RepID=Q6FWZ5_CANGA 0.0
FL-Next: sp=Probable phospholipid hydroperoxide glutathione peroxidase; Citrus sinensis (Sweet orange) (Citrus aurantium var. sinensis). 0.0
Sma3: Glutathione peroxidase 0.0
Complete
sp_v3.0_unigene31910 SustainPine v3.0 442
AutoFact: Extensin_2 multi-domain protein 3.0e-21
Sma3: Extensin 0.0
coding
sp_v3.0_unigene33054 SustainPine v3.0 552
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene34960 SustainPine v3.0 809
AutoFact: Glutathione peroxidase n=2 Tax=Picea sitchensis RepID=A9P272_PICSI 0.0
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutathione peroxidase 0.0
C-terminus
sp_v3.0_unigene35351 SustainPine v3.0 456
AutoFact: Drf_FH1 multi-domain protein 4.0e-16
Sma3: Glycine-rich protein 1.284e-11
coding
sp_v3.0_unigene35502 SustainPine v3.0 1206
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 0.0
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutathione peroxidase 0.0
Complete
sp_v3.0_unigene36154 SustainPine v3.0 1023
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 0.0
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutathione peroxidase 0.0
Complete
sp_v3.0_unigene36461 SustainPine v3.0 532
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 0.0
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glutathione peroxidase 0.0
Internal
sp_v3.0_unigene37350 SustainPine v3.0 615
AutoFact: Glutathione peroxidase n=1 Tax=Ricinus communis RepID=B9T4A6_RICCO 7.9874e-44
FL-Next: sp=HUA2-like protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene37448 SustainPine v3.0 725
AutoFact: FAP multi-domain protein 1.0e-22
Sma3: Glycine-rich protein 4.015e-13
coding
sp_v3.0_unigene37860 SustainPine v3.0 809
AutoFact: Chalcone synthase (Fragment) n=4 Tax=Pseudotsuga RepID=C6F7B7_PSEMZ 2.0e-18
FL-Next: tr=Pinocembrin chalcone synthase; Pinus densiflora (Japanese red pine). 0.0
Sma3: Glycine-rich RNA-binding protein 4.62428e-44
C-terminus
sp_v3.0_unigene40115 SustainPine v3.0 150
AutoFact: FAP multi-domain protein 1.0e-16
Sma3: Glycine-rich protein 3.191e-13
unknown
sp_v3.0_unigene40700 SustainPine v3.0 582
AutoFact: PCF11P-similar protein 4 n=3 Tax=Arabidopsis RepID=Q0WPF2_ARATH 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
N-terminus
sp_v3.0_unigene44257 SustainPine v3.0 576
AutoFact: Drf_FH1 multi-domain protein 2.0e-21
Sma3: Glycine-rich protein 2.503e-15
coding
sp_v3.0_unigene44606 SustainPine v3.0 827
AutoFact: Glutathione peroxidase (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z6F2_PICSI 0.0
FL-Next: sp=Probable phospholipid hydroperoxide glutathione peroxidase; Spinacia oleracea (Spinach). 0.0
Sma3: Glutathione peroxidase 0.0
Complete
sp_v3.0_unigene47145 SustainPine v3.0 111
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene47759 SustainPine v3.0 1072
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain