Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA recombination

Term: GO:0006310  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene62061 SustainPine v3.0 240
AutoFact: DNA ligase 4 n=2 Tax=Arabidopsis RepID=DNLI4_ARATH 3.0e-28
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 5.004e-10
Internal
sp_v3.0_unigene62444 SustainPine v3.0 248
AutoFact: DNA ligase n=1 Tax=Populus trichocarpa RepID=B9IN68_POPTR 2.0e-08
FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene62917 SustainPine v3.0 245
AutoFact: putative DNA helicase [Arabidopsis thaliana] 1.0e-17
FL-Next: sp=ATP-dependent DNA helicase Q-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene64037 SustainPine v3.0 244
AutoFact: DNA ligase n=2 Tax=Selaginella moellendorffii RepID=D8SJP8_SELML 4.0e-28
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene64704 SustainPine v3.0 259
AutoFact: DNA repair protein reca, putative n=1 Tax=Ricinus communis RepID=B9RK79_RICCO 3.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene64884 SustainPine v3.0 151
AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 5.0e-11
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 5.912e-07
Internal
sp_v3.0_unigene68699 SustainPine v3.0 236
AutoFact: Meiotic recombination protein DMC1 homolog n=1 Tax=Glycine max RepID=DMC1_SOYBN 3.0e-20
FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Meiotic recombination protein DMC1 homolog 3.125e-12
C-terminus
sp_v3.0_unigene69991 SustainPine v3.0 413
AutoFact: Holliday junction ATP-dependent DNA helicase ruvB n=4 Tax=Staphylococcus aureus RepID=RUVB_STAAB 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
N-terminus
sp_v3.0_unigene71861 SustainPine v3.0 295
AutoFact: DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI 2.0e-28
FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
Internal
sp_v3.0_unigene74927 SustainPine v3.0 325
AutoFact: DEAD/DEAH box helicase, putative n=2 Tax=Metarhizium RepID=E9EFH5_METAQ 5.0e-34
FL-Next: tr=Predicted protein; Ostreococcus lucimarinus (strain CCE9901). 0.0
Internal
sp_v3.0_unigene75229 SustainPine v3.0 343
AutoFact: putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] 1.0e-22
FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75584 SustainPine v3.0 197
AutoFact: putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] 1.0e-11
FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene80201 SustainPine v3.0 250
AutoFact: ATP-dependent RNA helicase-like protein n=2 Tax=Oryza sativa RepID=Q69J41_ORYSJ 6.0e-28
FL-Next: tr=ATP-dependent RNA helicase-like protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene80456 SustainPine v3.0 216
AutoFact: Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ 1.0e-26
FL-Next: Isoform 2 of ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana GN=RECQL3 0.0
Internal
sp_v3.0_unigene80496 SustainPine v3.0 263
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 3.0e-15
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 2.851e-07
Internal
sp_v3.0_unigene81638 SustainPine v3.0 142
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 3.0e-15
FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DNA ligase 7.815e-10
Internal
sp_v3.0_unigene94218 SustainPine v3.0 314
AutoFact: RecQ-like helicase 2 [Oryza sativa Japonica Group] 9.80909e-45
FL-Next: Isoform 2 of Mediator of RNA polymerase II transcription subunit 34 OS=Arabidopsis thaliana GN=MED34 0.0
Sma3: DNA Helicase 1.082e-17
Internal
sp_v3.0_unigene94757 SustainPine v3.0 846
AutoFact: Snm1 n=4 Tax=Oryza sativa RepID=Q5NSW7_ORYSJ 0.0
FL-Next: sp=DNA cross-link repair protein SNM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA cross-link repair protein pso2/snm1, putative 1.967e-08
Internal
sp_v3.0_unigene95666 SustainPine v3.0 462
AutoFact: Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ 2.0e-29
FL-Next: sp=ATP-dependent DNA helicase Q-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA helicase, putative 6.802e-08
Putative N-terminus
sp_v3.0_unigene96401 SustainPine v3.0 695
AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 2.94273e-44
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 34; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 5.047e-11
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain