Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA recombination

Term: GO:0006310  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene37139 SustainPine v3.0 1233
AutoFact: DNA repair protein recA-like 1 [Arabidopsis thaliana] sp|Q39199.1|RECAC_ARATH RecName: Full=DNA repair protein recA homolog 1, chloroplastic; AltName: Full=Recombinase A homolog 1; Flags: Precursor gb|AAA61781.1| chloroplast DNA repair protein precursor [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RecA DNA recombinase 2.754e-08
Putative C-terminus
sp_v3.0_unigene37536 SustainPine v3.0 1605
AutoFact: DNA helicase recq1, putative n=1 Tax=Ricinus communis RepID=B9S1J8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 1.765e-11
C-terminus
sp_v3.0_unigene38938 SustainPine v3.0 545
AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 0.0
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 7.815e-10
Internal
sp_v3.0_unigene38962 SustainPine v3.0 987
AutoFact: XRCC4 homolog [Populus nigra] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr18 scaffold_122, whole genome shotgun sequence 5.783e-06
N-terminus
sp_v3.0_unigene40706 SustainPine v3.0 979
AutoFact: PREDICTED: similar to Os07g0681600 n=1 Tax=Vitis vinifera RepID=UPI00019834DE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA Helicase 5.744e-14
Internal
sp_v3.0_unigene41551 SustainPine v3.0 152
AutoFact: Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ 2.0e-17
FL-Next: sp=ATP-dependent DNA helicase Q-like SIM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene41771 SustainPine v3.0 869
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 0.0
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene42173 SustainPine v3.0 299
AutoFact: putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] 5.0e-29
FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene44382 SustainPine v3.0 1524
AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA Helicase 4.028e-21
C-terminus
sp_v3.0_unigene44673 SustainPine v3.0 161
AutoFact: DNA helicase RECQE-like [Oryza sativa Japonica Group] gb|EAZ24829.1| hypothetical protein OsJ_08609 [Oryza sativa Japonica Group] 6.0e-15
FL-Next: Isoform 2 of ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana GN=RECQL3 0.0
Internal
sp_v3.0_unigene45112 SustainPine v3.0 596
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 0.0
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene45118 SustainPine v3.0 172
AutoFact: putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] 7.0e-18
FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene46300 SustainPine v3.0 402
AutoFact: putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48678 SustainPine v3.0 200
AutoFact: putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] 1.0e-11
FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene49946 SustainPine v3.0 278
AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 2.0e-13
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene51208 SustainPine v3.0 343
AutoFact: DNA ligase 4 n=2 Tax=Arabidopsis RepID=DNLI4_ARATH 4.99997e-41
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene52410 SustainPine v3.0 364
AutoFact: PREDICTED: similar to RECQSIM (Arabidopsis RecQ helicase sim); ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019849D7 4.0e-17
FL-Next: sp=ATP-dependent DNA helicase Q-like SIM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative DNA helicase RecQsim 3.449e-09
Internal
sp_v3.0_unigene53275 SustainPine v3.0 229
AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 6.0e-31
FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene54134 SustainPine v3.0 357
AutoFact: DNA repair protein RAD51-like 2 [Arabidopsis thaliana] gb|AEC08140.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana] 1.0e-21
FL-Next: sp=DNA repair protein RAD51 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene59230 SustainPine v3.0 207
AutoFact: DNA ligase n=2 Tax=Selaginella moellendorffii RepID=D8RMH0_SELML 6.0e-12
FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
Sma3: DNA ligase 5.95e-14
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain