Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin remodeling complex

Term: GO:0016585  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene46130 SustainPine v3.0 561
AutoFact: putative transcriptional regulator [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 3.709e-32
Internal
sp_v3.0_unigene51229 SustainPine v3.0 260
AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 5.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-40 repeat-containing protein MSI1 4.959e-09
Internal
sp_v3.0_unigene52446 SustainPine v3.0 273
AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 3.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.08e-09
C-terminus
sp_v3.0_unigene52753 SustainPine v3.0 170
AutoFact: SWI/SNF class chromatin remodeling complex protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSB9_PHYPA 1.0e-09
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SWI/SNF class chromatin remodeling complex protein 1.427e-08
Internal
sp_v3.0_unigene52869 SustainPine v3.0 322
AutoFact: MSI type nucleosome/chromatin assembly factor C (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00YD9_OSTTA 5.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.08e-09
Putative C-terminus
sp_v3.0_unigene58572 SustainPine v3.0 395
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 1.487e-15
Internal
sp_v3.0_unigene61931 SustainPine v3.0 122
AutoFact: Actin-related protein 6 n=5 Tax=Camelineae RepID=ARP6_ARATH 3.0e-08
FL-Next: sp=Actin-related protein 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene62709 SustainPine v3.0 166
AutoFact: Probable histone-binding protein Caf1 n=24 Tax=Coelomata RepID=CAF1_DROME 9.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene62720 SustainPine v3.0 292
AutoFact: PREDICTED: similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase n=1 Tax=Vitis vinifera RepID=UPI0001983E18 1.0e-27
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SWR1 complex protein, SNF2 family DNA-dependent ATPase 6.904e-09
Internal
sp_v3.0_unigene64604 SustainPine v3.0 231
AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TQZ8_PHYPA 1.0e-20
FL-Next: sp=Probable chromatin-remodeling complex ATPase chain; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chromatin remodeling complex subunit 5.653e-08
Internal
sp_v3.0_unigene73703 SustainPine v3.0 470
AutoFact: RecName: Full=Helicase SWR1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 2.257e-38
Internal
sp_v3.0_unigene75989 SustainPine v3.0 204
AutoFact: WD-40 repeat-containing protein MSI1 n=8 Tax=core eudicotyledons RepID=MSI1_ARATH 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 1.142e-09
N-terminus
sp_v3.0_unigene76350 SustainPine v3.0 370
AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Aspergillus oryzae RIB40 RepID=Q2U236_ASPOR 7.00649e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SWR1 complex protein, SNF2 family DNA-dependent ATPase 1.003e-08
Internal
sp_v3.0_unigene76478 SustainPine v3.0 253
AutoFact: Actin-related protein 6 n=5 Tax=Camelineae RepID=ARP6_ARATH 8.0e-09
FL-Next: sp=Actin-related protein 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Actin-related protein 6 1.077e-08
C-terminus
sp_v3.0_unigene76619 SustainPine v3.0 321
AutoFact: RAD26-like SNF2 family DNA-dependent ATPase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D7Q2_LACBS 1.0e-24
FL-Next: tr=GAGA-binding transcriptional activator; Pinus taeda (Loblolly pine). 0.0
Sma3: SNF2 super family 3.206e-32
Putative C-terminus
sp_v3.0_unigene78202 SustainPine v3.0 143
AutoFact: Actin related protein n=1 Tax=Populus trichocarpa RepID=B9IMW6_POPTR 4.0e-15
FL-Next: sp=Actin-related protein 6; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Actin-related protein 6 1.155e-16
Internal
sp_v3.0_unigene79564 SustainPine v3.0 330
AutoFact: Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.08e-09
C-terminus
sp_v3.0_unigene93612 SustainPine v3.0 1821
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 9.648e-28
Putative Complete
sp_v3.0_unigene94189 SustainPine v3.0 368
AutoFact: MSI type nucleosome/chromatin assembly factor C, putative n=2 Tax=Oryza sativa Japonica Group RepID=Q6ASS7_ORYSJ 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.08e-09
C-terminus
sp_v3.0_unigene97146 SustainPine v3.0 448
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 6.346e-17
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain