Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site

Term: IPR002464  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene112282 SustainPine v3.0 317
• AutoFact: ATP-dependent RNA helicase, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C7G2_ARATH 8.99998e-41
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.012e-24
Internal
sp_v3.0_unigene112812 SustainPine v3.0 426
• AutoFact: putative ATP-dependent RNA helicase [Oryza sativa Japonica Group] 6.0e-07
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Sma3: ATP-dependent RNA helicase, putative 9.306e-07
Internal
sp_v3.0_unigene112912 SustainPine v3.0 538
• AutoFact: Gag-pol polyprotein, putative [Solanum demissum] 4.99997e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.144e-11
Putative C-terminus
sp_v3.0_unigene113060 SustainPine v3.0 344
• AutoFact: Strong similarity to gb|U04968 nucleotide excision repair protein (ERCC2) from Cricetulus grisseus [Arabidopsis thaliana] 0.0
• FL-Next: sp=DNA repair helicase UVH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA repair helicase UVH6 7.91e-09
Internal
sp_v3.0_unigene117153 SustainPine v3.0 291
• AutoFact: ATP-dependent DNA helicase Q-like 1 [Arabidopsis thaliana] sp|Q9FT74.1|RQL1_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 1; AltName: Full=RecQ-like protein 1; Short=AtRecQ1; Short=AtRecQl1 emb|CAC14163.1| DNA Helicase [Arabidopsis thaliana] gb|AE 1.0e-14
• FL-Next: sp=ATP-dependent DNA helicase Q-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene117241 SustainPine v3.0 295
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S9D0_RICCO 3.0e-26
• FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene118295 SustainPine v3.0 270
• AutoFact: DNA Helicase [Arabidopsis thaliana] 2.0e-23
• FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA Helicase 5.61e-08
Internal
sp_v3.0_unigene118530 SustainPine v3.0 521
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RLT0_RICCO 7.00649e-44
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Putative C-terminus
sp_v3.0_unigene119909 SustainPine v3.0 325
• AutoFact: Streptomyces cyclase/dehydrase family protein [Brassica oleracea] 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AT-rich element binding factor 3 3.593e-16
Internal
sp_v3.0_unigene120981 SustainPine v3.0 369
• AutoFact: DNA Helicase [Arabidopsis thaliana] 0.0
• FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA helicase isolog 1.083e-08
Internal
sp_v3.0_unigene123250 SustainPine v3.0 352
• AutoFact: putative DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8 (RNA helicase) [Oryza sativa Japonica Group] 1.0e-26
• FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene125218 SustainPine v3.0 274
• AutoFact: DEA(D/H)-box RNA helicase family protein n=4 Tax=Arabidopsis RepID=F4HYJ6_ARATH 3.0e-36
• FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
• Sma3: ATP-dependent RNA helicase, putative 6.332e-09
Internal
sp_v3.0_unigene125357 SustainPine v3.0 376
• AutoFact: DNA Helicase [Arabidopsis thaliana] 8.0e-14
• FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene125721 SustainPine v3.0 201
• AutoFact: ATP-dependent DNA helicase Q-like 1 n=1 Tax=Arabidopsis thaliana RepID=RQL1_ARATH 4.0e-19
• FL-Next: sp=ATP-dependent DNA helicase Q-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene125753 SustainPine v3.0 396
• AutoFact: zinc finger-related and helicase and IBR domain-containing protein [Arabidopsis thaliana] sp|P0CE10.1|Y4102_ARATH RecName: Full=Putative uncharacterized protein At4g01020, chloroplastic; Flags: Precursor gb|AEE81967.1| zinc finger-related and helicase and 1.0e-27
• FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 2.412e-06
Internal
sp_v3.0_unigene131190 SustainPine v3.0 602
• AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene131364 SustainPine v3.0 362
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 1.00053e-42
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene131645 SustainPine v3.0 221
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Streptomyces cyclase/dehydrase family protein 8.439e-09
Internal
sp_v3.0_unigene131946 SustainPine v3.0 380
• AutoFact: Adenylate kinase 1, putative n=1 Tax=Ricinus communis RepID=B9RMJ0_RICCO 5.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Adenylate kinase 1, putative 1.563e-08
Putative N-terminus
sp_v3.0_unigene132331 SustainPine v3.0 323
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RMI9_RICCO 6.0e-39
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 8.289e-07
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain