Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site

Term: IPR002464  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene62917 SustainPine v3.0 245
• AutoFact: putative DNA helicase [Arabidopsis thaliana] 1.0e-17
• FL-Next: sp=ATP-dependent DNA helicase Q-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene63305 SustainPine v3.0 169
• AutoFact: ATP-dependent RNA helicase A-like protein n=2 Tax=Arabidopsis RepID=Q9FF84_ARATH 3.0e-14
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.145e-09
Internal
sp_v3.0_unigene67705 SustainPine v3.0 299
• AutoFact: PREDICTED: similar to helicase domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001983869 7.0e-34
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene68057 SustainPine v3.0 131
• AutoFact: Putative ATP-dependent RNA helicase n=1 Tax=Oryza sativa RepID=Q9FW67_ORYSA 5.0e-11
• FL-Next: tr=ATP-dependent RNA helicase Dhx29; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Sma3: ATP-dependent RNA helicase, putative 4.01e-12
Internal
sp_v3.0_unigene68412 SustainPine v3.0 278
• AutoFact: RNA helicase - like protein [Arabidopsis thaliana] emb|CAB78848.1| RNA helicase-like protein [Arabidopsis thaliana] 6.0e-13
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene68735 SustainPine v3.0 253
• AutoFact: DNA repair helicase rad5,16, putative n=1 Tax=Ricinus communis RepID=B9STJ2_RICCO 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA repair helicase rad5,16, putative 2.683e-07
Internal
sp_v3.0_unigene70598 SustainPine v3.0 137
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S958_RICCO 3.0e-09
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene73137 SustainPine v3.0 193
• AutoFact: putative farnesyltransferase beta subunit [Oryza sativa Japonica Group] 7.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene73703 SustainPine v3.0 470
• AutoFact: RecName: Full=Helicase SWR1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromatin remodeling complex subunit 2.257e-38
Internal
sp_v3.0_unigene73970 SustainPine v3.0 294
• AutoFact: PREDICTED: similar to helicase domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001985AA9 9.00054e-42
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 4.276e-18
Internal
sp_v3.0_unigene75005 SustainPine v3.0 196
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.161e-18
N-terminus
sp_v3.0_unigene75229 SustainPine v3.0 343
• AutoFact: putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] 1.0e-22
• FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75568 SustainPine v3.0 194
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 2.0e-18
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 2.12e-09
Internal
sp_v3.0_unigene75584 SustainPine v3.0 197
• AutoFact: putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana] 1.0e-11
• FL-Next: sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene76619 SustainPine v3.0 321
• AutoFact: RAD26-like SNF2 family DNA-dependent ATPase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D7Q2_LACBS 1.0e-24
• FL-Next: tr=GAGA-binding transcriptional activator; Pinus taeda (Loblolly pine). 0.0
• Sma3: SNF2 super family 3.206e-32
Putative C-terminus
sp_v3.0_unigene77980 SustainPine v3.0 198
• AutoFact: Strong similarity to gb|U04968 nucleotide excision repair protein (ERCC2) from Cricetulus grisseus [Arabidopsis thaliana] 9.0e-18
• FL-Next: sp=DNA repair helicase UVH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA repair helicase UVH6 7.91e-09
Internal
sp_v3.0_unigene78580 SustainPine v3.0 242
• AutoFact: Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16 n=1 Tax=Puccinia graminis f. sp. tritici CRL 75-36-700-3 RepID=E3L0K8_PUCGT 2.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAH-box RNA helicase 4.361e-09
Internal
sp_v3.0_unigene78750 SustainPine v3.0 170
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AT-rich element binding factor 3 8.043e-12
Internal
sp_v3.0_unigene79197 SustainPine v3.0 441
• AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJL1_PHYPA 0.0
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SNF2 family DNA-dependent ATPase 2.652e-06
Internal
sp_v3.0_unigene79551 SustainPine v3.0 261
• AutoFact: putative helicase [Oryza sativa Japonica Group] 3.99931e-42
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.182e-11
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain