Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: pseudouridine synthesis

Term: GO:0001522  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene95119 SustainPine v3.0 571
• AutoFact: RNA pseudourine synthase 4 [Arabidopsis thaliana] sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA pseudourine synthase 4, mitochondrial; AltName: Full=RNA pseudouridylate synthase 4; AltName: Full=RNA-uridine isomerase 4; Flags: Precursor dbj|BAB02469.1| unnamed 1.99965e-42
• FL-Next: sp=RNA pseudourine synthase 4, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA-uridine isomerase 4 2.745e-09
Internal
sp_v3.0_unigene99855 SustainPine v3.0 563
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AA47_PICSI 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 2.436e-13
Internal
sp_v3.0_unigene103657 SustainPine v3.0 409
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene104067 SustainPine v3.0 488
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 7 1.818e-09
Internal
sp_v3.0_unigene104085 SustainPine v3.0 550
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 1.253e-19
C-terminus
sp_v3.0_unigene105547 SustainPine v3.0 705
• AutoFact: RNA pseudourine synthase 2, chloroplastic n=2 Tax=Oryza sativa RepID=PUS2_ORYSJ 2.8026e-45
• FL-Next: sp=RNA pseudourine synthase 2, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 2 3.506e-09
N-terminus
sp_v3.0_unigene106226 SustainPine v3.0 482
• AutoFact: Unassigned protein
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene111546 SustainPine v3.0 287
• AutoFact: Pseudouridine synthase n=1 Tax=Ricinus communis RepID=B9SM90_RICCO 2.0e-26
• FL-Next: sp=Pseudouridine synthase; Ricinus communis (Castor bean). 0.0
• Sma3: Pseudouridylate synthase 1.049e-19
Internal
sp_v3.0_unigene120927 SustainPine v3.0 352
• AutoFact: Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis RepID=B9SLG9_RICCO 1.0e-30
• FL-Next: sp=RNA pseudourine synthase 3, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 3 5.586e-10
Internal
sp_v3.0_unigene124437 SustainPine v3.0 220
• AutoFact: Pseudouridine synthase n=1 Tax=Ricinus communis RepID=B9SM90_RICCO 4.0e-21
• FL-Next: sp=Pseudouridine synthase; Ricinus communis (Castor bean). 0.0
• Sma3: Pseudouridylate synthase 4.205e-10
Internal
sp_v3.0_unigene137607 SustainPine v3.0 265
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 7 9.88e-10
Putative C-terminus
sp_v3.0_unigene138361 SustainPine v3.0 324
• AutoFact: putative tRNA pseudouridine synthase [Arabidopsis thaliana] sp|O22928.1|PUSH_ARATH RecName: Full=Putative tRNA pseudouridine synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gb|AAC16945.1| putative pseudouridine 2.0e-11
• FL-Next: sp=Putative tRNA pseudouridine synthase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene148848 SustainPine v3.0 258
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI 4.99983e-42
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 6.758e-23
Internal
sp_v3.0_unigene149495 SustainPine v3.0 141
• AutoFact: YTH domain containing protein 2.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Yth domain-containing protein, putative 6.857e-24
Internal
sp_v3.0_unigene154054 SustainPine v3.0 411
• AutoFact: H/ACA ribonucleoprotein complex subunit 4 [Bos taurus] gb|AAI34582.1| DKC1 protein [Bos taurus] gb|DAA13229.1| dyskerin [Bos taurus] 8.00141e-43
• FL-Next: sp=H/ACA ribonucleoprotein complex subunit 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Centromere/microtubule binding protein cbf5, putative 3.187e-08
Internal
sp_v3.0_unigene159295 SustainPine v3.0 326
• AutoFact: H/ACA ribonucleoprotein complex subunit 4 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CI46_9EUKA 2.0e-23
• FL-Next: sp=H/ACA ribonucleoprotein complex subunit 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene160834 SustainPine v3.0 316
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=A9P2G1_PICSI 1.0e-34
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 2.528e-06
Putative C-terminus
sp_v3.0_unigene162327 SustainPine v3.0 280
• AutoFact: suppressor of variegation1 causing pseudouridine synthase-like protein [Arabidopsis thaliana] gb|AAM66944.1| unknown [Arabidopsis thaliana] dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] gb|AEC09639.1| suppressor of variegation1 causing pseudourid 5.0e-11
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain