Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: YTH domain

Term: IPR007275  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene245 SustainPine v3.0 1743
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 4.285e-27
Putative C-terminus
sp_v3.0_unigene321 SustainPine v3.0 2895
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: YT521-B-like family protein, expressed 4.162e-11
Complete
sp_v3.0_unigene845 SustainPine v3.0 2956
AutoFact: armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gb|AEE75940.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Exportin-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8 1.091e-08
Putative Complete
sp_v3.0_unigene981 SustainPine v3.0 1987
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene2658 SustainPine v3.0 2771
AutoFact: YTH domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 6.029e-11
Complete
sp_v3.0_unigene3890 SustainPine v3.0 2993
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene5284 SustainPine v3.0 2531
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene5674 SustainPine v3.0 1982
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene8581 SustainPine v3.0 1782
AutoFact: Domains rearranged methyltransferase n=3 Tax=Nicotiana RepID=B1GYI2_NICSY 0.0
FL-Next: tr=DNA methyltransferase; subsp. trichocarpa). 0.0
Sma3: DNA methyltransferase 4.44e-13
Complete
sp_v3.0_unigene19000 SustainPine v3.0 3349
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 1.204e-14
Complete
sp_v3.0_unigene19257 SustainPine v3.0 3377
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 2.106e-07
Complete
sp_v3.0_unigene37864 SustainPine v3.0 1983
AutoFact: pfam04146, YTH, YT521-B-like domain 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
C-terminus
sp_v3.0_unigene46352 SustainPine v3.0 1357
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
Complete
sp_v3.0_unigene51033 SustainPine v3.0 128
AutoFact: DRM-type DNA-methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTT0_ELAGV 1.0e-10
FL-Next: sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA methyltransferase 7.291e-10
Internal
sp_v3.0_unigene52070 SustainPine v3.0 224
AutoFact: Unassigned protein 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene58412 SustainPine v3.0 307
AutoFact: Yth domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SK12_RICCO 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 6.459e-16
Internal
sp_v3.0_unigene61249 SustainPine v3.0 138
AutoFact: Putative DNA cytosine methyltransferase Zmet3 n=1 Tax=Oryza sativa Japonica Group RepID=Q8H7W0_ORYSJ 4.0e-13
FL-Next: sp=DNA (cytosine-5)-methyltransferase DRM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA methyltransferase 7.961e-10
Internal
sp_v3.0_unigene64413 SustainPine v3.0 187
AutoFact: YTH domain containing protein 4.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 2.147e-27
Internal
sp_v3.0_unigene76597 SustainPine v3.0 158
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] gb|AAF19747.1|AC009917_6 Contains similarity to gb|U96448 cleavage and polyadenylation specificity factor 30 kDa from Bos taurus [Arabidopsis thaliana] gb|AAN41459.1| putative c 2.0e-13
FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
Internal
sp_v3.0_unigene77091 SustainPine v3.0 261
AutoFact: YTH domain containing protein 1.0e-11
FL-Next: sp=Zinc finger CCCH domain-containing protein 45; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain