Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: mismatched DNA binding

Term: GO:0030983  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene62667 SustainPine v3.0 160
AutoFact: DNA mismatch repair protein mlh1, putative n=1 Tax=Ricinus communis RepID=B9S712_RICCO 4.0e-14
FL-Next: tr=DNA mismatch repair protein mlh1, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene62823 SustainPine v3.0 212
AutoFact: Mismatch repair protein (Fragment) n=1 Tax=Solanum lycopersicum RepID=D6QY21_SOLLC 3.0e-26
FL-Next: sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: MutS homolog 7 1.374e-08
Internal
sp_v3.0_unigene64033 SustainPine v3.0 213
AutoFact: DNA mismatch repair protein MSH4 [Arabidopsis thaliana] gb|AEE83882.1| DNA mismatch repair protein MSH4 [Arabidopsis thaliana] 2.0e-12
FL-Next: sp=DNA mismatch repair protein MSH4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene64094 SustainPine v3.0 218
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SQS1_RICCO 3.0e-22
FL-Next: sp=DNA mismatch repair protein MSH1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA mismatch repair protein 1.552e-22
Internal
sp_v3.0_unigene64651 SustainPine v3.0 116
AutoFact: DNA mismatch repair protein n=3 Tax=Arabidopsis RepID=Q941I6_ARATH 2.0e-08
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene64700 SustainPine v3.0 263
AutoFact: MutS-like protein 5 [Arabidopsis thaliana] 4.0e-26
FL-Next: sp=DNA mismatch repair protein MSH5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene64754 SustainPine v3.0 170
AutoFact: putative mismatch binding protein Mus3 [Oryza sativa Japonica Group] dbj|BAD36299.1| putative mismatch binding protein Mus3 [Oryza sativa Japonica Group] 4.0e-26
FL-Next: sp=DNA mismatch repair protein MSH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene65993 SustainPine v3.0 319
AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene69460 SustainPine v3.0 233
AutoFact: Thiamin pyrophosphokinase, putative n=1 Tax=Ricinus communis RepID=B9SAN6_RICCO 7.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Thiamin pyrophosphokinase, putative 7.149e-09
Internal
sp_v3.0_unigene69853 SustainPine v3.0 433
AutoFact: DNA mismatch repair protein n=1 Tax=Cucumis sativus RepID=B3U2A3_CUCSA 1.0e-36
FL-Next: sp=DNA mismatch repair protein MSH1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA mismatch repair protein 2.271e-22
Internal
sp_v3.0_unigene72566 SustainPine v3.0 285
AutoFact: putative DNA mismatch repair protein [Arabidopsis thaliana] 1.0e-22
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene72641 SustainPine v3.0 150
AutoFact: cleavage/polyadenylation specificity factor [Arabidopsis thaliana] dbj|BAC42701.1| unknown protein [Arabidopsis thaliana] gb|AAO63939.1| unknown protein [Arabidopsis thaliana] dbj|BAF00402.1| hypothetical protein [Arabidopsis thaliana] gb|AEE85076.1| clea 1.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene75124 SustainPine v3.0 363
AutoFact: DNA mismatch repair protein [Zea mays] gb|AAX53096.1| DNA mismatch repair protein [Zea mays] 3.0e-15
FL-Next: sp=DNA mismatch repair protein MSH1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA mismatch repair protein 6.01e-15
C-terminus
sp_v3.0_unigene77501 SustainPine v3.0 281
AutoFact: MutS-like protein 5 [Arabidopsis thaliana] 4.0e-27
FL-Next: sp=DNA mismatch repair protein MSH5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene77591 SustainPine v3.0 193
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 2.0e-11
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene77673 SustainPine v3.0 350
AutoFact: cleavage and polyadenylation specific factor 5 [Coprinopsis cinerea okayama7#130] gb|EAU83620.1| cleavage and polyadenylation specific factor 5 [Coprinopsis cinerea okayama7#130] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MRNA cleavage factor subunit-like protein 1.501e-09
Putative C-terminus
sp_v3.0_unigene77691 SustainPine v3.0 278
AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.31e-13
N-terminus
sp_v3.0_unigene77951 SustainPine v3.0 289
AutoFact: Related to U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Sporisorium reilianum RepID=E6ZPV4_9BASI 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 2.848e-13
N-terminus
sp_v3.0_unigene78597 SustainPine v3.0 282
AutoFact: ATPase [Cryptococcus neoformans var. neoformans JEC21] ref|XP_775817.1| hypothetical protein CNBD2270 [Cryptococcus neoformans var. neoformans B-3501A] gb|EAL21170.1| hypothetical protein CNBD2270 [Cryptococcus neoformans var. neoformans B-3501A] gb|AAW43 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AAA-type ATPase family protein, putative, expressed 9.203e-08
Internal
sp_v3.0_unigene94491 SustainPine v3.0 829
AutoFact: PREDICTED: similar to KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter n=1 Tax=Vitis vinifera RepID=UPI0001984E30 0.0
FL-Next: sp=K(+) efflux antiporter 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain