Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: mismatch repair

Term: GO:0006298  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene151079 SustainPine v3.0 455
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 42; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene154424 SustainPine v3.0 181
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 42; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene154600 SustainPine v3.0 278
AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated [Tribolium castaneum] 6.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.227e-13
Internal
sp_v3.0_unigene155868 SustainPine v3.0 357
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene155994 SustainPine v3.0 265
AutoFact: cleavage and polyadenylation specificity factor subunit 5 [Aspergillus niger CBS 513.88] emb|CAK42804.1| unnamed protein product [Aspergillus niger] 8.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene157002 SustainPine v3.0 425
AutoFact: putative mismatch binding protein Mus3 [Oryza sativa Japonica Group] dbj|BAD36299.1| putative mismatch binding protein Mus3 [Oryza sativa Japonica Group] 8.0e-09
FL-Next: sp=DNA mismatch repair protein MSH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene157917 SustainPine v3.0 281
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AAA-type ATPase family protein, putative, expressed 6.735e-08
Internal
sp_v3.0_unigene158722 SustainPine v3.0 416
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] gb|AEE84971.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Microtubule-severing protein katanin 60kDa subunit 4.813e-07
Internal
sp_v3.0_unigene159400 SustainPine v3.0 474
AutoFact: PREDICTED: DNA mismatch repair protein Msh6-like n=1 Tax=Anolis carolinensis RepID=UPI000203838B 0.0
FL-Next: sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: MutS homolog 7 5.347e-08
Internal
sp_v3.0_unigene161516 SustainPine v3.0 318
AutoFact: DNA mismatch repair protein [Arabidopsis thaliana] dbj|BAF02028.1| putative DNA mismatch repair protein [Arabidopsis thaliana] 8.0e-14
FL-Next: sp=DNA mismatch repair protein MSH5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene163305 SustainPine v3.0 326
AutoFact: RVT_1 domain containing protein 1.0e-14
FL-Next: sp=Uncharacterized mitochondrial protein AtMg01250; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
N-terminus
sp_v3.0_unigene164242 SustainPine v3.0 202
AutoFact: MutS homolog 7 [Arabidopsis thaliana] 9.0e-16
FL-Next: sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: MutS homolog 7 3.168e-09
Internal
sp_v3.0_unigene164322 SustainPine v3.0 165
AutoFact: putative thiamin pyrophosphokinase [Oryza sativa Japonica Group] dbj|BAD53067.1| putative thiamin pyrophosphokinase [Oryza sativa Japonica Group] 9.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Thiamin pyrophosphokinase 1 1.592e-08
Internal
sp_v3.0_unigene165093 SustainPine v3.0 270
AutoFact: thiamin pyrophosphokinase1 [Arabidopsis thaliana] gb|AAF02878.1|AC009525_12 Unknown protein [Arabidopsis thaliana] gb|AAM62805.1| thiamin pyrophosphokinase, putative [Arabidopsis thaliana] gb|AEE27489.1| thiamin pyrophosphokinase1 [Arabidopsis thaliana] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative thiamin pyrophosphokinase 9.826e-13
Internal
sp_v3.0_unigene165602 SustainPine v3.0 176
AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 3.0e-18
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative N-terminus
sp_v3.0_unigene166042 SustainPine v3.0 351
AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
N-terminus
sp_v3.0_unigene166253 SustainPine v3.0 284
AutoFact: MutS homolog 7 [Triticum aestivum] 1.0e-33
FL-Next: sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: MutS homolog 7 2.626e-08
Internal
sp_v3.0_unigene166955 SustainPine v3.0 497
AutoFact: pfam01423, LSM, LSM domain 3.0e-13
FL-Next: tr=Glycine rich protein-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
Complete
sp_v3.0_unigene167140 SustainPine v3.0 307
AutoFact: DNA mismatch repair protein MutS2-like [Arabidopsis thaliana] 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene167790 SustainPine v3.0 168
AutoFact: putative DNA mismatch repair protein [Arabidopsis thaliana] 8.0e-09
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain