Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene77235 SustainPine v3.0 221
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Chlorella variabilis RepID=E1Z6E6_9CHLO 4.0e-21
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene77691 SustainPine v3.0 278
• AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.31e-13
N-terminus
sp_v3.0_unigene77951 SustainPine v3.0 289
• AutoFact: Related to U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Sporisorium reilianum RepID=E6ZPV4_9BASI 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 2.848e-13
N-terminus
sp_v3.0_unigene79566 SustainPine v3.0 249
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NLD0_PICSI 2.0e-31
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Internal
sp_v3.0_unigene79821 SustainPine v3.0 229
• AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor, putative 9.272e-14
Internal
sp_v3.0_unigene80010 SustainPine v3.0 198
• AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gb|AAL67014.1| putative RNA helicase [Arabidopsis thaliana] gb|AAM91806.1| putative RNA helicase [Arabidopsis thaliana] gb|AEE31492.1| pre-mRNA-splicing factor ATP-dependent 5.0e-09
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene81530 SustainPine v3.0 179
• AutoFact: ATP-dependent RNA helicase, putative-related [Oryza sativa Japonica Group] gb|AAX96100.1| Similar to ATP-dependent RNA helicase, putative [Oryza sativa Japonica Group] 2.0e-20
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 7.699e-24
Internal
sp_v3.0_unigene93773 SustainPine v3.0 1049
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.307e-11
C-terminus
sp_v3.0_unigene94039 SustainPine v3.0 504
• AutoFact: Putative polypyrimidine track-binding protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5TKN2_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene94040 SustainPine v3.0 1400
• AutoFact: Intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] gb|AED95448.1| Intron maturase, type II family protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA binding protein, putative 4.585e-06
C-terminus
sp_v3.0_unigene94835 SustainPine v3.0 448
• AutoFact: splicing factor Prp18-like protein [Arabidopsis thaliana] gb|AAD25794.1|AC006550_2 Similar to gb|U51990 pre-mRNA-splicing factor hPrp18 from Homo sapiens. ESTs gb|T46391 and gb|AA721815 come from this gene [Arabidopsis thaliana] gb|AAK25940.1|AF360230_1 u 1.0e-34
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: Prp18 domain containing protein 2.953e-09
C-terminus
sp_v3.0_unigene95465 SustainPine v3.0 1154
• AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 0.0
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Prp18 domain containing protein 1.818e-09
N-terminus
sp_v3.0_unigene97269 SustainPine v3.0 1305
• AutoFact: PREDICTED: similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase n=1 Tax=Vitis vinifera RepID=UPI00019851EB 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.094e-34
Internal
sp_v3.0_unigene99654 SustainPine v3.0 501
• AutoFact: pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 6.4e-19
Internal
sp_v3.0_unigene99719 SustainPine v3.0 627
• AutoFact: Cytochrome b n=11 Tax=Spermatophyta RepID=E1CBG8_CYCTA 0.0
• FL-Next: sp=Cytochrome b6; Podocarpus totara. Plastid; Chloroplast. 0.0
• Sma3: Cytochrome b 6.25e-08
Putative C-terminus
sp_v3.0_unigene99836 SustainPine v3.0 1115
• AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed 1.55e-08
Putative C-terminus
sp_v3.0_unigene100244 SustainPine v3.0 861
• AutoFact: CRS1_YhbY domain containing protein 4.0e-12
• FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: CRS2-associated factor 2, mitochondrial 7.652e-09
N-terminus
sp_v3.0_unigene100325 SustainPine v3.0 424
• AutoFact: Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U572_VITVI 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene100870 SustainPine v3.0 282
• AutoFact: Step II splicing factor slu7, putative n=1 Tax=Ricinus communis RepID=B9SF44_RICCO 3.0e-28
• FL-Next: sp=Pre-mRNA-splicing factor SLU7-A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene101425 SustainPine v3.0 716
• AutoFact: PREDICTED: similar to Probable ATP-dependent helicase DHX35 (DEAH-box protein 35) [Canis familiaris] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.315e-23
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain