Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene60528 SustainPine v3.0 326
• AutoFact: splicing factor-like protein [Vitis riparia] 5.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor RSP41 5.335e-08
N-terminus
sp_v3.0_unigene61313 SustainPine v3.0 239
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 5.0e-07
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene61595 SustainPine v3.0 190
• AutoFact: PREDICTED: similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase n=1 Tax=Vitis vinifera RepID=UPI00019851EB 2.0e-13
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Putative pre-mRNA splicing factor RNA helicase 3.06e-09
C-terminus
sp_v3.0_unigene61627 SustainPine v3.0 227
• AutoFact: putative RNA helicase [Oryza sativa Japonica Group] dbj|BAD35820.1| putative RNA helicase [Oryza sativa Japonica Group] 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pre-mRNA splicing factor RNA helicase 4.756e-08
Putative N-terminus
sp_v3.0_unigene61692 SustainPine v3.0 243
• AutoFact: RNA helicase - like protein [Arabidopsis thaliana] emb|CAB78848.1| RNA helicase-like protein [Arabidopsis thaliana] 5.0e-30
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.335e-21
Internal
sp_v3.0_unigene62140 SustainPine v3.0 347
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 3.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.422e-11
Internal
sp_v3.0_unigene64129 SustainPine v3.0 274
• AutoFact: Maturase K n=33 Tax=Cupressaceae RepID=Q9MSV0_9CONI 7.0e-27
• FL-Next: sp=Maturase K 1; Pinus yunnanensis (Yunnan pine). Plastid; Chloroplast. 0.0
• Sma3: Maturase K 1.495e-27
Internal
sp_v3.0_unigene64716 SustainPine v3.0 239
• AutoFact: CRS2-associated factor 2 [Arabidopsis thaliana] sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor gb|AAF79596.1|AC007 8.0e-22
• FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 1.336e-12
Internal
sp_v3.0_unigene67717 SustainPine v3.0 267
• AutoFact: pre mRNA splicing factor sf2 [Oryza sativa Indica Group] 4.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor, putative 2.553e-14
Internal
sp_v3.0_unigene68995 SustainPine v3.0 269
• AutoFact: putative U2 snRNP auxiliary factor [Chenopodium rubrum] 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 1.917e-11
Internal
sp_v3.0_unigene70706 SustainPine v3.0 185
• AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 9.0e-18
• FL-Next: tr=Potassium channel regulatory factor, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Prp18 domain containing protein 9.88e-10
Internal
sp_v3.0_unigene72197 SustainPine v3.0 312
• AutoFact: Splicing factor u2af large subunit, putative n=1 Tax=Ricinus communis RepID=B9SGJ4_RICCO 6.0e-22
• FL-Next: sp=Splicing factor U2af large subunit B; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: U2 snRNP auxiliary factor large subunit B 8.32e-16
Internal
sp_v3.0_unigene73970 SustainPine v3.0 294
• AutoFact: PREDICTED: similar to helicase domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001985AA9 9.00054e-42
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 4.276e-18
Internal
sp_v3.0_unigene74074 SustainPine v3.0 348
• AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor, putative 9.398e-14
Internal
sp_v3.0_unigene74596 SustainPine v3.0 334
• AutoFact: arginine/serine rich splicing factor sf4/14, putative; K13096 splicing factor 4 8.0e-27
• FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Splicing factor 4-like protein 1.696e-09
Internal
sp_v3.0_unigene74901 SustainPine v3.0 373
• AutoFact: ATP synthase subunit alpha n=2 Tax=Agaricales RepID=A8N9G5_COPC7 0.0
• FL-Next: tr=ATPase alpha subunit; Larix griffithiana. Mitochondrion. 0.0
• Sma3: ATP synthase subunit alpha 1.111e-18
Internal
sp_v3.0_unigene75005 SustainPine v3.0 196
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.161e-18
N-terminus
sp_v3.0_unigene75103 SustainPine v3.0 426
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Sclerotiniaceae RepID=A7F0U7_SCLS1 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene75419 SustainPine v3.0 349
• AutoFact: polypyrimidine track-binding protein homologue [Cicer arietinum] 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene75568 SustainPine v3.0 194
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 2.0e-18
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 2.12e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain