Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene46112 SustainPine v3.0 795
• AutoFact: DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana] sp|Q9LU46.1|RH35_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 35 dbj|BAA97391.1| DEAD-box protein abstrakt [Arabidopsis thaliana] dbj|BAE98527.1| DEAD-box protein abstrakt [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.135e-19
C-terminus
sp_v3.0_unigene46471 SustainPine v3.0 282
• AutoFact: DEAD/DEAH box helicase [Dictyostelium discoideum AX4] sp|Q54MH3.1|DHX16_DICDI RecName: Full=Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16; AltName: Full=DEAH-box protein 16 gb|EAL64503.1| DEAD/DEAH box helicase [Dictyostelium discoide 5.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.925e-21
N-terminus
sp_v3.0_unigene47270 SustainPine v3.0 143
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RMI9_RICCO 7.0e-07
• FL-Next: tr=ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.304e-14
Internal
sp_v3.0_unigene47349 SustainPine v3.0 309
• AutoFact: Pre-mRNA branch site p14-like protein n=2 Tax=Arabidopsis RepID=PM14_ARATH 6.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 1.227e-09
N-terminus
sp_v3.0_unigene48227 SustainPine v3.0 225
• AutoFact: CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36264.1| unknown protein [Arabidopsis thaliana] gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis 1.0e-21
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
• Sma3: Protein CHLOROPLAST RNA SPLICING 1 7.691e-13
Internal
sp_v3.0_unigene49019 SustainPine v3.0 146
• AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SBS3_PHYPA 3.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 2.356e-09
Internal
sp_v3.0_unigene49780 SustainPine v3.0 451
• AutoFact: Helicase, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C873_ARATH 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 7.349e-12
Internal
sp_v3.0_unigene49792 SustainPine v3.0 652
• AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 0.0
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Protein CHLOROPLAST RNA SPLICING 1 1.681e-12
Putative C-terminus
sp_v3.0_unigene51355 SustainPine v3.0 122
• AutoFact: Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative n=1 Tax=Ricinus communis RepID=B9SFZ6_RICCO 2.0e-10
• FL-Next: tr=Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene51635 SustainPine v3.0 476
• AutoFact: Maturase K n=364 Tax=Pinaceae RepID=MATK_PICEN 7.00649e-45
• FL-Next: sp=Maturase K; Pinus brutia subsp. brutia. Plastid; Chloroplast. 0.0
C-terminus
sp_v3.0_unigene51833 SustainPine v3.0 236
• AutoFact: Unassigned protein
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene52533 SustainPine v3.0 394
• AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 3.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein polypeptide G 5.391e-13
Putative Complete
sp_v3.0_unigene54776 SustainPine v3.0 331
• AutoFact: Sm snRNP core protein Smf1 n=1 Tax=Coccidioides posadasii str. Silveira RepID=E9D5W6_COCPS 4.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein f, putative 6.229e-09
Complete
sp_v3.0_unigene54997 SustainPine v3.0 176
• AutoFact: U2 auxiliary factor small subunit [Arabidopsis thaliana] 7.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 1.301e-11
Internal
sp_v3.0_unigene55818 SustainPine v3.0 229
• AutoFact: Maturase-related protein (Fragment) n=3 Tax=Cycadales RepID=B0BLG8_CYCTA 4.0e-18
• FL-Next: tr=Maturase; Zea mays (Maize). Mitochondrion. 0.0
• Sma3: Maturase 0.0
Putative N-terminus
sp_v3.0_unigene55903 SustainPine v3.0 313
• AutoFact: Polypyrimidine tract-binding protein homolog 3 n=4 Tax=Arabidopsis RepID=PTBP3_ARATH 5.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene57535 SustainPine v3.0 392
• AutoFact: Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Rhizoplaca chrysoleuca RepID=D6QT62_9LECA 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene57590 SustainPine v3.0 406
• AutoFact: Potassium channel regulatory factor, putative n=1 Tax=Ricinus communis RepID=B9S407_RICCO 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene57628 SustainPine v3.0 352
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene59465 SustainPine v3.0 459
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 2.94273e-44
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain