Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene23871 SustainPine v3.0 451
AutoFact: pre-mRNA branch site protein p14 [Arabidopsis thaliana] ref|XP_002873554.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] sp|Q9FMP4.1|PM14_ARATH RecName: Full=Pre-mRNA branch site p14-like protein dbj|BAB10037.1| unnamed prot 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
Complete
sp_v3.0_unigene24027 SustainPine v3.0 1357
AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gb|AAL67014.1| putative RNA helicase [Arabidopsis thaliana] gb|AAM91806.1| putative RNA helicase [Arabidopsis thaliana] gb|AEE31492.1| pre-mRNA-splicing factor ATP-dependent 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent RNA helicase, putative 6.004e-20
Putative C-terminus
sp_v3.0_unigene24335 SustainPine v3.0 703
AutoFact: Maturase (Fragment) n=1 Tax=Pinus sp. Qiu 94013 RepID=Q9T671_9CONI 0.0
FL-Next: tr=MatR; Abies nephrolepis. Mitochondrion. 0.0
Sma3: Maturase 0.0
N-terminus
sp_v3.0_unigene25669 SustainPine v3.0 450
AutoFact: Potassium channel regulatory factor n=1 Tax=Metarhizium anisopliae ARSEF 23 RepID=E9F9J5_METAR 6.99949e-42
FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
Sma3: Prp18 domain containing protein 2.304e-09
C-terminus
sp_v3.0_unigene29152 SustainPine v3.0 980
AutoFact: CRS2-associated factor 2 [Arabidopsis thaliana] sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor gb|AAF79596.1|AC007 0.0
FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 8.321e-13
N-terminus
sp_v3.0_unigene29231 SustainPine v3.0 578
AutoFact: Unassigned protein
coding
sp_v3.0_unigene29332 SustainPine v3.0 477
AutoFact: Maturase (Fragment) n=1 Tax=Pinus sp. Qiu 94013 RepID=Q9T671_9CONI 0.0
FL-Next: tr=MatR; Abies nephrolepis. Mitochondrion. 0.0
Sma3: Maturase 7.071e-21
Internal
sp_v3.0_unigene29772 SustainPine v3.0 1262
AutoFact: Peptidyl-tRNA hydrolase [Arabidopsis thaliana] sp|Q6NLS8.1|PTHM_ARATH RecName: Full=Peptidyl-tRNA hydrolase, mitochondrial; AltName: Full=M-PTH; AltName: Full=Mitochondrial CRS2-like protein; AltName: Full=Mitochondrial RNA splicing factor; Flags: Precurs 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-tRNA hydrolase, putative 9.112e-12
Complete
sp_v3.0_unigene30787 SustainPine v3.0 618
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Monosiga brevicollis RepID=A9UYA2_MONBE 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene31269 SustainPine v3.0 560
AutoFact: 20 kDa cyclophilin precursor [Toxoplasma gondii] 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene31368 SustainPine v3.0 665
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Blastocystis hominis RepID=D8M4H8_BLAHO 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene31560 SustainPine v3.0 538
AutoFact: PREDICTED: peptidyl-prolyl cis-trans isomerase H-like n=1 Tax=Pongo abelii RepID=UPI0001D5D432 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative Complete
sp_v3.0_unigene31582 SustainPine v3.0 423
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Blastocystis hominis RepID=D8MA36_BLAHO 2.0e-38
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene31590 SustainPine v3.0 493
AutoFact: Peptidyl-prolyl cis-trans isomerase n=3 Tax=Giardia intestinalis RepID=A8BC67_GIAIC 8.0e-27
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene31683 SustainPine v3.0 574
AutoFact: Peptidyl-prolyl cis-trans isomerase slr1251 n=1 Tax=Synechocystis sp. PCC 6803 RepID=PPI2_SYNY3 3.0e-39
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene31924 SustainPine v3.0 611
AutoFact: Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Pleurotus ostreatus RepID=Q96TV2_PLEOS 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative Complete
sp_v3.0_unigene32178 SustainPine v3.0 389
AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Candida RepID=PPIA_CANAL 6.99949e-42
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene32196 SustainPine v3.0 1102
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor RSP41 1.765e-16
Complete
sp_v3.0_unigene33166 SustainPine v3.0 904
AutoFact: small nuclear ribonucleoprotein F [Arabidopsis thaliana] ref|XP_002867361.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp. lyrata] ref|XP_002885912.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp. lyrata] sp|Q9SUM2. 4.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein f, putative 7.34e-09
Complete
sp_v3.0_unigene33335 SustainPine v3.0 590
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Polysphondylium pallidum RepID=D3BQE6_POLPA 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain