Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene205682 SustainPine v3.0 412
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phlebotomus papatasi RepID=A8C9X3_PHLPP 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene205707 SustainPine v3.0 305
AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Entamoeba RepID=B0ET56_ENTDI 5.0e-40
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene205713 SustainPine v3.0 649
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Vanda hybrid cultivar RepID=D6PAY2_9ASPA 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene206667 SustainPine v3.0 534
AutoFact: Peptidyl-prolyl cis-trans isomerase n=15 Tax=core eudicotyledons RepID=CYPH_CATRO 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative Complete
sp_v3.0_unigene208539 SustainPine v3.0 876
AutoFact: putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor, putative 1.249e-13
Putative C-terminus
sp_v3.0_unigene209050 SustainPine v3.0 295
AutoFact: pre-mRNA branch site protein p14 [Arabidopsis thaliana] ref|XP_002873554.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] sp|Q9FMP4.1|PM14_ARATH RecName: Full=Pre-mRNA branch site p14-like protein dbj|BAB10037.1| unnamed prot 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
N-terminus
sp_v3.0_unigene209201 SustainPine v3.0 631
AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 3.00018e-42
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene210099 SustainPine v3.0 392
AutoFact: Intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] gb|AED95448.1| Intron maturase, type II family protein [Arabidopsis thaliana] 7.0e-23
FL-Next: sp=Uncharacterized mitochondrial protein ymf11; Marchantia polymorpha (Liverwort) (Marchantia aquatica). Mitochondrion. 0.0
Sma3: RNA binding protein, putative 4.585e-06
Internal
sp_v3.0_unigene210260 SustainPine v3.0 1053
AutoFact: Pre-mRNA-splicing factor SLU7-A [Arabidopsis thaliana] sp|Q9SHY8.2|SLU7A_ARATH RecName: Full=Pre-mRNA-splicing factor SLU7-A gb|AAO22622.1| putative step II splicing factor [Arabidopsis thaliana] gb|AEE34408.1| Pre-mRNA-splicing factor SLU7-A [Arabidopsis 0.0
FL-Next: sp=Pre-mRNA-splicing factor SLU7-A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene210505 SustainPine v3.0 397
AutoFact: putative small nuclear ribonucleoprotein Prp4p [Arabidopsis thaliana] dbj|BAF01385.1| putative U4/U6 small nuclear ribonucleoprotein [Arabidopsis thaliana] 6.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain