Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA splicing

Term: GO:0008380  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene189625 SustainPine v3.0 602
• AutoFact: Small nuclear ribonucleoprotein F n=3 Tax=Pleosporineae RepID=B2VQW0_PYRTR 2.8026e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene190215 SustainPine v3.0 407
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Argopecten irradians RepID=A8QKJ4_AEQIR 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene190317 SustainPine v3.0 409
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Entamoeba RepID=B0ET56_ENTDI 9.99967e-42
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene190453 SustainPine v3.0 360
• AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SBS3_PHYPA 7.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
N-terminus
sp_v3.0_unigene190747 SustainPine v3.0 324
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 2.0e-14
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene190854 SustainPine v3.0 393
• AutoFact: Splicing factor U2af 38 kDa subunit n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2UL33_9EUKA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.461e-11
Internal
sp_v3.0_unigene191135 SustainPine v3.0 662
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Glomerella graminicola M1.001 RepID=E3QB26_COLGM 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene191307 SustainPine v3.0 491
• AutoFact: Cyclophilin n=1 Tax=Loa loa RepID=E1G2L1_LOALO 2.0e-29
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative C-terminus
sp_v3.0_unigene191540 SustainPine v3.0 500
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Metarhizium acridum CQMa 102 RepID=E9E173_METAQ 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative Complete
sp_v3.0_unigene192121 SustainPine v3.0 458
• AutoFact: PREDICTED: similar to GL19160 isoform 1 n=2 Tax=Ciona intestinalis RepID=UPI00006A5B0C 6.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.31e-13
Putative Complete
sp_v3.0_unigene192280 SustainPine v3.0 513
• AutoFact: DUF1777 multi-domain protein 3.0e-19
coding
sp_v3.0_unigene194004 SustainPine v3.0 163
• AutoFact: Cytochrome b n=301 Tax=Magnoliophyta RepID=CYB_ARATH 8.0e-25
• FL-Next: sp=Cytochrome b6; Cathaya argyrophylla. Plastid; Chloroplast. 0.0
• Sma3: Cytochrome b 2.245e-15
Internal
sp_v3.0_unigene198610 SustainPine v3.0 372
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 6.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.422e-11
N-terminus
sp_v3.0_unigene200237 SustainPine v3.0 372
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FQT3_PHATC 2.0e-34
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative N-terminus
sp_v3.0_unigene202850 SustainPine v3.0 698
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=3 Tax=Perkinsus RepID=A7YXM3_PERCH 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene203188 SustainPine v3.0 673
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Guillardia theta RepID=Q1ENA7_GUITH 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase CYP20-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Complete
sp_v3.0_unigene204578 SustainPine v3.0 293
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Micromonas sp. RCC299 RepID=C1EA22_MICSR 5.0e-24
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene204706 SustainPine v3.0 577
• AutoFact: Peptidyl-prolyl cis-trans isomerase D n=3 Tax=Paracoccidioides brasiliensis RepID=C1GGQ1_PARBD 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative Complete
sp_v3.0_unigene205474 SustainPine v3.0 554
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Sclerotiniaceae RepID=Q6WP53_BOTFU 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
Putative Complete
sp_v3.0_unigene205535 SustainPine v3.0 433
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus RepID=D8LET8_ECTSI 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain