Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain, eukaryote

Term: IPR003954  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene93773 SustainPine v3.0 1049
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.307e-11
C-terminus
sp_v3.0_unigene103561 SustainPine v3.0 583
AutoFact: CCR4-NOT transcription complex subunit 4 n=2 Tax=Arabidopsis RepID=Q9M1E4_ARATH 3.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene105990 SustainPine v3.0 175
AutoFact: CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] emb|CAB75492.1| putative protein [Arabidopsis thaliana] gb|AEE78053.1| CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene108035 SustainPine v3.0 468
AutoFact: CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] emb|CAB75492.1| putative protein [Arabidopsis thaliana] gb|AEE78053.1| CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
N-terminus
sp_v3.0_unigene128315 SustainPine v3.0 397
AutoFact: DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO 2.0e-08
FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Splicing factor 45 1.214e-09
C-terminus
sp_v3.0_unigene131612 SustainPine v3.0 530
AutoFact: U2 auxiliary factor small subunit [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.089e-11
Putative N-terminus
sp_v3.0_unigene149627 SustainPine v3.0 267
AutoFact: DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO 2.0e-06
FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Splicing factor 45 2.9e-09
C-terminus
sp_v3.0_unigene154723 SustainPine v3.0 365
AutoFact: U2 small nuclear RNA auxiliary factor 1 (Fragment) n=1 Tax=Microcosmus squamiger RepID=E3PQY0_9ASCI 9.99967e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 1.517e-11
Internal
sp_v3.0_unigene162352 SustainPine v3.0 408
AutoFact: CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] emb|CAB75492.1| putative protein [Arabidopsis thaliana] gb|AEE78053.1| CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene165805 SustainPine v3.0 476
AutoFact: Splicing factor U2af small subunit B [Arabidopsis thaliana] ref|NP_974870.1| Splicing factor U2af small subunit B [Arabidopsis thaliana] sp|Q9FMY5.1|U2AFB_ARATH RecName: Full=Splicing factor U2af small subunit B; AltName: Full=U2 auxiliary factor 35 kDa s 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.746e-11
N-terminus
sp_v3.0_unigene166753 SustainPine v3.0 128
AutoFact: Splicing factor U2AF 26 kDa subunit n=2 Tax=Agaricales RepID=A8N5I3_COPC7 6.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.196e-11
N-terminus
sp_v3.0_unigene184309 SustainPine v3.0 772
AutoFact: Putative U2 snRNP auxiliary factor (Fragment) n=1 Tax=Chenopodium rubrum RepID=Q1H8Q9_CHERU 5.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 3.873e-12
Internal
sp_v3.0_unigene189283 SustainPine v3.0 621
AutoFact: CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] emb|CAB75492.1| putative protein [Arabidopsis thaliana] gb|AEE78053.1| CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene190854 SustainPine v3.0 393
AutoFact: Splicing factor U2af 38 kDa subunit n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2UL33_9EUKA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.461e-11
Internal
sp_v3.0_unigene198610 SustainPine v3.0 372
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 6.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.422e-11
N-terminus
sp_v3.0_unigene210169 SustainPine v3.0 581
AutoFact: Putative U2 snRNP auxiliary factor (Fragment) n=1 Tax=Chenopodium rubrum RepID=Q1H8Q9_CHERU 3.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 3.277e-12
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain