Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: SNF2-related

Term: IPR000330  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene241 SustainPine v3.0 1733
AutoFact: pre-mRNA processing factor [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mrna splicing factor 4.959e-09
N-terminus
sp_v3.0_unigene252 SustainPine v3.0 1729
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 2.211e-18
Complete
sp_v3.0_unigene262 SustainPine v3.0 778
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 5.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 super family 1.757e-18
Putative N-terminus
sp_v3.0_unigene327 SustainPine v3.0 1894
AutoFact: Caldesmon multi-domain protein 7.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxilin-like protein 2.43e-23
Complete
sp_v3.0_unigene340 SustainPine v3.0 5840
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 2.792e-14
Putative Complete
sp_v3.0_unigene667 SustainPine v3.0 2713
AutoFact: DNA repair and recombination protein RAD54B, putative n=1 Tax=Ricinus communis RepID=B9RYJ2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 super family 6.56e-12
Complete
sp_v3.0_unigene917 SustainPine v3.0 2119
AutoFact: Chromodomain helicase DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SCD7_RICCO 9.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 3.36e-07
Putative Complete
sp_v3.0_unigene1292 SustainPine v3.0 3810
AutoFact: protein chromatin remodeling 24 [Arabidopsis thaliana] gb|AAL58917.1|AF462829_1 AT5g63950/MBM17_5 [Arabidopsis thaliana] gb|AAM98274.1| At5g63950/MBM17_5 [Arabidopsis thaliana] gb|AED97819.1| protein chromatin remodeling 24 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 9.271e-07
Complete
sp_v3.0_unigene1424 SustainPine v3.0 913
AutoFact: SWR1 complex protein, SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S832_PHYPA 5.0e-19
FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Sma3: SWR1 complex protein, SNF2 family DNA-dependent ATPase 3.006e-09
Internal
sp_v3.0_unigene1753 SustainPine v3.0 7119
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 super family 5.128e-13
Complete
sp_v3.0_unigene1875 SustainPine v3.0 5252
AutoFact: SNF2 family DNA-dependent ATPase (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TI22_PHYPA 0.0
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 1.086e-16
Complete
sp_v3.0_unigene3062 SustainPine v3.0 3706
AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HYM3_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA repair helicase rad5,16, putative 9.176e-11
Putative Complete
sp_v3.0_unigene3296 SustainPine v3.0 2028
AutoFact: putative type 1 RNA helicase [Oryza sativa Japonica Group] gb|EEE67210.1| hypothetical protein OsJ_24327 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptide deformylase 1.11e-15
Putative Complete
sp_v3.0_unigene3388 SustainPine v3.0 5791
AutoFact: DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp|Q8RXS6.2|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb|AEE79637.1| DNA helicase INO80 complex-like 1 [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SWR1 complex protein, SNF2 family DNA-dependent ATPase 3.603e-08
Complete
sp_v3.0_unigene3601 SustainPine v3.0 1865
AutoFact: chromatin remodeling 5 [Arabidopsis thaliana] gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 6.666e-34
Putative Complete
sp_v3.0_unigene3794 SustainPine v3.0 2975
AutoFact: human Mi-2 autoantigen-like protein [Arabidopsis thaliana] dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 5.211e-11
Putative Complete
sp_v3.0_unigene6494 SustainPine v3.0 2143
AutoFact: SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gb|AAC97224.1| putative helicase [Arabidopsis thaliana] gb|AAL24339.1| SNF2/RAD54 family (ETL1 subfamily) protein [Arabidopsis thaliana] gb|AAO00936.1| SNF2/RAD54 family (ETL1 subfamily) p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 super family 3.151e-12
Putative Complete
sp_v3.0_unigene6591 SustainPine v3.0 1352
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9I6D4_POPTR 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Chromosome chr6 scaffold_28, whole genome shotgun sequence 7.264e-06
N-terminus
sp_v3.0_unigene6666 SustainPine v3.0 3232
AutoFact: ISWI chromatin remodeling complex ATPase ISW1, putative n=1 Tax=Ricinus communis RepID=B9S6I7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 super family 1.796e-12
Complete
sp_v3.0_unigene6762 SustainPine v3.0 2672
AutoFact: pre-mRNA-splicing factor 38B [Arabidopsis thaliana] gb|AAM13215.1| unknown protein [Arabidopsis thaliana] gb|AAP68295.1| At5g37370 [Arabidopsis thaliana] gb|AED94173.1| pre-mRNA-splicing factor 38B [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain