Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: circadian rhythm

Term: GO:0007623  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene12899 SustainPine v3.0 843
• AutoFact: RecName: Full=Potassium channel AKT1; Short=OsAKT1 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene12914 SustainPine v3.0 3152
• AutoFact: mitogen activated protein kinase kinase [Oryza sativa Japonica Group] dbj|BAD31874.1| mitogen activated protein kinase kinase [Oryza sativa Japonica Group] gb|EAZ40375.1| hypothetical protein OsJ_24821 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 7.00649e-44
Putative Complete
sp_v3.0_unigene13793 SustainPine v3.0 1564
• AutoFact: putative serine/threonine-protein kinase WNK6 [Arabidopsis thaliana] ref|NP_001189928.1| putative serine/threonine-protein kinase WNK6 [Arabidopsis thaliana] sp|Q8S8Y8.1|WNK6_ARATH RecName: Full=Probable serine/threonine-protein kinase WNK6; Short=AtWNK6; 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 8.974e-40
Complete
sp_v3.0_unigene16329 SustainPine v3.0 781
• AutoFact: Serine/threonine-protein kinase WNK1 n=4 Tax=Arabidopsis RepID=WNK1_ARATH 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 3.302e-26
Internal
sp_v3.0_unigene16701 SustainPine v3.0 305
• AutoFact: Potassium channel KAT2, putative n=1 Tax=Ricinus communis RepID=B9S124_RICCO 9.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Potassium channel 1.648e-15
Internal
sp_v3.0_unigene17592 SustainPine v3.0 1048
• AutoFact: RNA binding protein [Nicotiana sylvestris] gb|ADG03640.1| RNA-binding glycine-rich protein [Nicotiana tabacum] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Complete
sp_v3.0_unigene18326 SustainPine v3.0 2630
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene18903 SustainPine v3.0 955
• AutoFact: Potassium channel AKT1, putative n=1 Tax=Ricinus communis RepID=B9STQ4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Potassium channel 9.916e-34
Internal
sp_v3.0_unigene19081 SustainPine v3.0 366
• AutoFact: Potassium channel n=3 Tax=Andropogoneae RepID=O04242_MAIZE 8.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Potassium channel 1.244e-13
Internal
sp_v3.0_unigene21141 SustainPine v3.0 1075
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 2.0e-22
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene21606 SustainPine v3.0 533
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 9.0e-29
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative N-terminus
sp_v3.0_unigene22201 SustainPine v3.0 367
• AutoFact: Two-component response regulator ARR17 n=2 Tax=Arabidopsis RepID=ARR17_ARATH 5.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Type-a response regulator 3.277e-39
Internal
sp_v3.0_unigene24676 SustainPine v3.0 668
• AutoFact: Superoxide dismutase n=1 Tax=Ectocarpus siliculosus RepID=D8LI17_ECTSI 0.0
• FL-Next: sp=Superoxide dismutase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Superoxide dismutase 0.0
C-terminus
sp_v3.0_unigene25442 SustainPine v3.0 841
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 1.99993e-41
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene26947 SustainPine v3.0 590
• AutoFact: MAP kinase [Arabidopsis thaliana] dbj|BAB91128.1| Ser/Thr kinase [Arabidopsis thaliana] 1.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 2.457e-29
N-terminus
sp_v3.0_unigene28840 SustainPine v3.0 2898
• AutoFact: pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain 2.0e-09
• FL-Next: sp=Protein LHY; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: MYB transcription factor 1.275e-11
Complete
sp_v3.0_unigene28903 SustainPine v3.0 2814
• AutoFact: Timing of CAB expression 1 protein n=1 Tax=Castanea sativa RepID=Q56TL2_CASSA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Timing of CAB expression 1 6.363e-09
Complete
sp_v3.0_unigene32943 SustainPine v3.0 839
• AutoFact: Glycine-rich RNA-binding protein n=1 Tax=Sequoia sempervirens RepID=E5FXB3_SEQSE 9.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene34499 SustainPine v3.0 749
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene34940 SustainPine v3.0 1688
• AutoFact: with no lysine kinase 1 [Oryza sativa Indica Group] 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 1.012e-16
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain