Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: double-stranded DNA binding

Term: GO:0003690  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene126851 SustainPine v3.0 977
AutoFact: nucleic acid binding protein1 [Zea mays] gb|AAA33486.1| nucleic acid-binding protein [Zea mays] gb|ACG38158.1| ribonucleoprotein [Zea mays] gb|ACL52389.1| unknown [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleoprotein 3.69e-17
C-terminus
sp_v3.0_unigene127304 SustainPine v3.0 1619
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene127941 SustainPine v3.0 984
AutoFact: glycine-rich RNA-binding protein 3 [Arabidopsis thaliana] dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana] gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana] gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana] dbj|BAH30642.1| hypo 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 5.172e-09
Complete
sp_v3.0_unigene128050 SustainPine v3.0 719
AutoFact: putative ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana] 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 5.848e-07
Internal
sp_v3.0_unigene139787 SustainPine v3.0 464
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 3.0e-33
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
N-terminus
sp_v3.0_unigene146180 SustainPine v3.0 1024
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 1.0e-36
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene146440 SustainPine v3.0 438
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 6.0e-30
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
Putative N-terminus
sp_v3.0_unigene147216 SustainPine v3.0 696
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 7.00005e-41
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene148734 SustainPine v3.0 337
AutoFact: DUF296 domain containing protein 6.0e-12
FL-Next: sp=Putative DNA-binding protein ESCAROLA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: AT-hook DNA-binding protein 4.252e-14
Putative C-terminus
sp_v3.0_unigene152234 SustainPine v3.0 362
AutoFact: putative Glycine-rich protein 2 [Oryza sativa Japonica Group] dbj|BAD07599.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group] gb|EAZ21537.1| hypothetical protein OsJ_05164 [Oryza sativa Japonica Group] gb|ACD13288.1| cold shock domain protei 1.0e-17
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Cold-shock protein with RNA binding domain 4.714e-08
Putative N-terminus
sp_v3.0_unigene152637 SustainPine v3.0 506
AutoFact: glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40] dbj|BAE56344.1| unnamed protein product [Aspergillus oryzae RIB40] 2.0e-17
FL-Next: tr=Glycine-rich RNA-binding protein; Sequoia sempervirens (California redwood) (Taxodium sempervirens). 0.0
Sma3: Glycine-rich RNA-binding protein 1.586e-36
N-terminus
sp_v3.0_unigene155530 SustainPine v3.0 504
AutoFact: RNA-binding glycine rich protein [Nicotiana sylvestris] gb|ADG03639.1| RNA-binding glycine-rich protein [Nicotiana tabacum] 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 7 2.683e-10
Putative C-terminus
sp_v3.0_unigene159102 SustainPine v3.0 265
AutoFact: glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40] ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus flavus NRRL3357] dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40] gb|EED53406.1| heterogen 1.0e-21
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 7.776e-30
N-terminus
sp_v3.0_unigene160905 SustainPine v3.0 481
AutoFact: ESC, putative n=1 Tax=Ricinus communis RepID=B9RDE5_RICCO 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 5.413e-26
Internal
sp_v3.0_unigene169019 SustainPine v3.0 271
AutoFact: Gly_rich multi-domain protein 7.0e-17
Sma3: Glycine-rich RNA-binding protein 2.56e-14
coding
sp_v3.0_unigene189926 SustainPine v3.0 177
AutoFact: Gly_rich multi-domain protein 1.0e-09
unknown
sp_v3.0_unigene190190 SustainPine v3.0 397
AutoFact: GRP multi-domain protein 2.0e-11
Sma3: Putative glycine rich protein 6.261e-22
coding
sp_v3.0_unigene190483 SustainPine v3.0 473
AutoFact: Cold shock protein n=1 Tax=Bermanella marisrubri RepID=Q1N1Z0_9GAMM 7.0e-18
FL-Next: tr=Cold shock domain containing proteins, putative; Ricinus communis (Castor bean). 0.0
Sma3: Glycine-rich protein 2b 2.893e-08
Complete
sp_v3.0_unigene193124 SustainPine v3.0 443
AutoFact: glycine-rich RNA binding protein, putative [Arabidopsis thaliana] 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 7 4.271e-07
C-terminus
sp_v3.0_unigene199377 SustainPine v3.0 536
AutoFact: KU80-like protein (Fragment) n=1 Tax=Pinus sylvestris RepID=B1PYP3_PINSY 0.0
FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: KAP-2 3.314e-13
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain