Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: double-stranded DNA binding

Term: GO:0003690  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene63464 SustainPine v3.0 124
AutoFact: putative ubiquitin protease [Oryza sativa Indica Group] 2.0e-09
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 2.313e-07
Internal
sp_v3.0_unigene65687 SustainPine v3.0 202
AutoFact: Os02g0203000 protein n=2 Tax=Oryza sativa RepID=Q0E2Y8_ORYSJ 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription factor HY5 2.378e-14
Internal
sp_v3.0_unigene65977 SustainPine v3.0 336
AutoFact: DNA-binding protein n=1 Tax=Zea mays RepID=B6TYB6_MAIZE 5.0e-05
FL-Next: tr=DNA-binding protein; Zea mays (Maize). 0.0
Sma3: DNA-binding protein-like 6.269e-20
Internal
sp_v3.0_unigene68426 SustainPine v3.0 333
AutoFact: AT-hook DNA-binding protein n=1 Tax=Catharanthus roseus RepID=A1DR80_CATRO 7.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 8.686e-20
Internal
sp_v3.0_unigene70549 SustainPine v3.0 242
AutoFact: nucleic acid-binding protein-like [Oryza sativa Japonica Group] 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleoprotein 9.835e-14
Putative C-terminus
sp_v3.0_unigene70821 SustainPine v3.0 337
AutoFact: putative ubiquitin-specific protease [Oryza sativa Japonica Group] 1.00053e-42
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 3.082e-09
Internal
sp_v3.0_unigene71531 SustainPine v3.0 132
AutoFact: putative bZIP protein HY5 [Oryza sativa Japonica Group] 3.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription factor HY5 2.378e-14
Internal
sp_v3.0_unigene74063 SustainPine v3.0 363
AutoFact: Ubiquitin carboxyl-terminal hydrolase 7 n=1 Tax=Camponotus floridanus RepID=E2B1Q7_9HYME 0.0
FL-Next: Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 8.25e-07
Internal
sp_v3.0_unigene75871 SustainPine v3.0 504
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 2.0e-16
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
Putative C-terminus
sp_v3.0_unigene78454 SustainPine v3.0 174
AutoFact: KAP-2 n=1 Tax=Medicago truncatula RepID=Q8S563_MEDTR 4.0e-17
FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: KAP-2 3.602e-13
Internal
sp_v3.0_unigene94233 SustainPine v3.0 468
AutoFact: AT-hook DNA-binding protein [Catharanthus roseus] 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 7.717e-23
C-terminus
sp_v3.0_unigene104413 SustainPine v3.0 667
AutoFact: Ubiquitin specific protease 12 n=1 Tax=Nicotiana tabacum RepID=B6V765_TOBAC 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 9.986e-07
Internal
sp_v3.0_unigene106505 SustainPine v3.0 366
AutoFact: Unassigned protein
FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: KAP-2 3.108e-13
Internal
sp_v3.0_unigene107150 SustainPine v3.0 243
AutoFact: RecName: Full=ATP-dependent DNA helicase 2 subunit KU80; AltName: Full=ATP-dependent DNA helicase 2 subunit 2; AltName: Full=ATP-dependent DNA helicase II 80 kDa subunit gb|AAS01977.1| putative H-box binding protein, KAP2, with alternative splicing isofor 1.0e-22
FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: KAP-2 2.427e-13
Internal
sp_v3.0_unigene108389 SustainPine v3.0 556
AutoFact: ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AED91040.1| ubiq 4.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 1.022e-06
Putative Complete
sp_v3.0_unigene111174 SustainPine v3.0 572
AutoFact: DNA binding protein n=1 Tax=Zea mays RepID=B6SJB5_MAIZE 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 4.919e-17
Putative N-terminus
sp_v3.0_unigene114751 SustainPine v3.0 279
AutoFact: DUF296 domain containing protein 8.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 6.058e-26
Internal
sp_v3.0_unigene118475 SustainPine v3.0 225
AutoFact: DUF296 domain containing protein 3.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 5.956e-17
Internal
sp_v3.0_unigene119152 SustainPine v3.0 273
AutoFact: AT-hook DNA-binding protein n=1 Tax=Catharanthus roseus RepID=A1DR80_CATRO 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 4.216e-29
Internal
sp_v3.0_unigene126688 SustainPine v3.0 791
AutoFact: Nucleic acid-binding protein n=1 Tax=Zea mays RepID=Q41834_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribonucleoprotein 1.048e-16
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain