Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin modification

Term: GO:0016568  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene77430 SustainPine v3.0 290
• AutoFact: Protein HIRA n=2 Tax=Oryza sativa RepID=HIRA_ORYSJ 3.0e-28
• FL-Next: sp=Protein HIRA; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Protein HIRA 1.76e-13
Internal
sp_v3.0_unigene77762 SustainPine v3.0 339
• AutoFact: histone-lysine N-methyltransferase ATX5 [Arabidopsis thaliana] sp|Q8GZ42.1|ATX5_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX5; AltName: Full=Protein SET DOMAIN GROUP 29; AltName: Full=Trithorax-homolog protein 5; Short=TRX-homolog protein 5 2.0e-27
• FL-Next: sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Trithorax, putative 1.134e-08
Internal
sp_v3.0_unigene78202 SustainPine v3.0 143
• AutoFact: Actin related protein n=1 Tax=Populus trichocarpa RepID=B9IMW6_POPTR 4.0e-15
• FL-Next: sp=Actin-related protein 6; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Actin-related protein 6 1.155e-16
Internal
sp_v3.0_unigene79153 SustainPine v3.0 239
• AutoFact: histone-lysine N-methyltransferase ASHR3 [Arabidopsis thaliana] sp|Q949T8.1|ASHR3_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR3; AltName: Full=ASH1-related protein 3; AltName: Full=Protein SET DOMAIN GROUP 4; AltName: Full=Protein stamen lo 2.0e-19
• FL-Next: sp=Histone-lysine N-methyltransferase ASHR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene79508 SustainPine v3.0 310
• AutoFact: Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone acetyltransferase GCN5 4.361e-09
Internal
sp_v3.0_unigene79564 SustainPine v3.0 330
• AutoFact: Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleosome/chromatin assembly factor group 2.08e-09
C-terminus
sp_v3.0_unigene79690 SustainPine v3.0 244
• AutoFact: transcription cofactor, putative; K04498 E1A/CREB-binding protein [EC:2.3.1.48] 6.0e-14
• FL-Next: sp=Histone acetyltransferase HAC12; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: p300/CBP acetyltransferase-related protein 1.229e-08
Internal
sp_v3.0_unigene84799 SustainPine v3.0 404
• AutoFact: Trypan_PARP multi-domain protein 1.0e-18
• Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 6.532e-14
coding
sp_v3.0_unigene85280 SustainPine v3.0 357
• AutoFact: Trypan_PARP multi-domain protein 8.0e-13
• Sma3: Putative glycine rich protein 2.087e-20
coding
sp_v3.0_unigene85799 SustainPine v3.0 403
• AutoFact: PREDICTED: similar to Ca/calmodulin-dependent protein kinase phosphatase-N [Nasonia vitripennis] 6.0e-06
• Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 1.276e-12
coding
sp_v3.0_unigene85926 SustainPine v3.0 265
• AutoFact: Trypan_PARP multi-domain protein 9.0e-16
• Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 1.186e-19
coding
sp_v3.0_unigene93679 SustainPine v3.0 1042
• AutoFact: SET domain-containing protein (Fragment) n=2 Tax=Populus trichocarpa RepID=B9HSV4_POPTR 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone-lysine n-methyltransferase, suvh, putative 1.466e-07
Putative C-terminus
sp_v3.0_unigene93774 SustainPine v3.0 339
• AutoFact: Histone-lysine N-methyltransferase ASHR2 n=2 Tax=Arabidopsis thaliana RepID=ASHR2_ARATH 1.0e-06
• FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ASHR2 OS=Arabidopsis thaliana GN=ASHR2 0.0
• Sma3: Protein SET DOMAIN GROUP 39 9.747e-06
N-terminus
sp_v3.0_unigene93905 SustainPine v3.0 621
• AutoFact: Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Oryza sativa RepID=LDL3_ORYSJ 5.00264e-43
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Flavin-containing amine oxidase domain-containing protein, putative 3.922e-09
Putative C-terminus
sp_v3.0_unigene94088 SustainPine v3.0 374
• AutoFact: SET domain protein (Fragment) n=2 Tax=Populus trichocarpa RepID=B9IDM7_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone-lysine N-methyltransferase ATXR6, putative 6.584e-09
Putative C-terminus
sp_v3.0_unigene94189 SustainPine v3.0 368
• AutoFact: MSI type nucleosome/chromatin assembly factor C, putative n=2 Tax=Oryza sativa Japonica Group RepID=Q6ASS7_ORYSJ 3.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleosome/chromatin assembly factor group 2.08e-09
C-terminus
sp_v3.0_unigene94336 SustainPine v3.0 556
• AutoFact: zinc binding motif and SET domain-containing protein [Arabidopsis thaliana] gb|AEC07483.1| zinc binding motif and SET domain-containing protein [Arabidopsis thaliana] 4.06377e-44
• FL-Next: sp=Histone-lysine N-methyltransferase SUVR5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene94402 SustainPine v3.0 529
• AutoFact: RecName: Full=Protein HIRA; AltName: Full=Histone regulator protein emb|CAB88535.1| WD repeat domain protein [Arabidopsis thaliana] 2.00386e-43
• FL-Next: sp=Protein HIRA; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Protein HIRA 1.807e-13
Internal
sp_v3.0_unigene94831 SustainPine v3.0 455
• AutoFact: flowering locus D [Arabidopsis thaliana] 4.0e-09
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Protein LSD1-LIKE 1 3.168e-09
Internal
sp_v3.0_unigene95717 SustainPine v3.0 348
• AutoFact: [R] COG2940 Proteins containing SET domain 4.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone-lysine N-methyltransferase SUVR3 2.745e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain