Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA mediated transformation

Term: GO:0009294  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene154056 SustainPine v3.0 328
AutoFact: Histone deacetylase (Fragment) n=1 Tax=Nematostella vectensis RepID=A7RFA3_NEMVE 5.0e-37
FL-Next: sp=Histone deacetylase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 1.39429e-42
Internal
sp_v3.0_unigene155603 SustainPine v3.0 277
AutoFact: Histone acetyltransferase, ELP3 family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22HD8_TETTH 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase 2.12e-09
Putative C-terminus
sp_v3.0_unigene156729 SustainPine v3.0 511
AutoFact: Histone deacetylase family protein n=1 Tax=Dictyostelium fasciculatum RepID=F4PSW2_9MYCE 0.0
FL-Next: sp=Probable histone deacetylase 19; Zea mays (Maize). 0.0
Sma3: Histone deacetylase 1.21072e-42
Internal
sp_v3.0_unigene163527 SustainPine v3.0 349
AutoFact: histone chaperone ASF1B [Arabidopsis thaliana] sp|Q9LS09.1|ASF1B_ARATH RecName: Full=Histone chaperone ASF1B; AltName: Full=Anti-silencing function protein 1-like protein b; Short=Anti-silencing function 1b protein; AltName: Full=Silencing group A protein 6.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene164782 SustainPine v3.0 205
AutoFact: [R] COG2940 Proteins containing SET domain 4.0e-09
FL-Next: sp=Histone-lysine N-methyltransferase CLF; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Enhancer of zeste, ezh, putative 1.624e-08
Internal
sp_v3.0_unigene165262 SustainPine v3.0 182
AutoFact: Histone chaperone n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPE1_PHYPA 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone chaperone 3.897e-16
N-terminus
sp_v3.0_unigene167728 SustainPine v3.0 194
AutoFact: histone-lysine N-methyltransferase ATX3 [Arabidopsis thaliana] sp|Q9M364.2|ATX3_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX3; AltName: Full=Protein SET DOMAIN GROUP 14; AltName: Full=Trithorax-homolog protein 3; Short=TRX-homolog protein 3 6.0e-12
FL-Next: sp=Histone-lysine N-methyltransferase ATX3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Trithorax, putative 1.443e-08
Internal
sp_v3.0_unigene189875 SustainPine v3.0 630
AutoFact: SET domain protein (Fragment) n=2 Tax=Populus trichocarpa RepID=B9IDM7_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone-lysine N-methyltransferase ATXR6, putative 5.967e-09
C-terminus
sp_v3.0_unigene197474 SustainPine v3.0 314
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Ricinus communis RepID=B9RWB0_RICCO 2.0e-27
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cytosine-specific methyltransferase 1.325e-32
Internal
sp_v3.0_unigene200362 SustainPine v3.0 391
AutoFact: histone chaperone ASF1, putative [Aspergillus clavatus NRRL 1] gb|EAW09680.1| histone chaperone ASF1, putative [Aspergillus clavatus NRRL 1] 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone chaperone 6.045e-16
N-terminus
sp_v3.0_unigene208272 SustainPine v3.0 596
AutoFact: Histone deacetylase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U4N6_VITVI 0.0
FL-Next: sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 3.96708e-42
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain