Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA mediated transformation

Term: GO:0009294  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene105601 SustainPine v3.0 426
AutoFact: Histone chaperone n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U2F4_PHYPA 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone chaperone 1.307e-16
Putative C-terminus
sp_v3.0_unigene106474 SustainPine v3.0 154
AutoFact: SET domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IDS5_POPTR 4.0e-21
FL-Next: sp=Histone-lysine N-methyltransferase ATX4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Trithorax, putative 1.538e-08
Internal
sp_v3.0_unigene107858 SustainPine v3.0 438
AutoFact: Histone deacetylase hda1, putative n=1 Tax=Ricinus communis RepID=B9RE34_RICCO 8.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone deacetylase 5.387e-14
Internal
sp_v3.0_unigene107974 SustainPine v3.0 524
AutoFact: Histone deacetylase RPD3/HDA1 class II n=3 Tax=Triticeae RepID=C1IC96_HORVU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone deacetylase 3.488e-14
Internal
sp_v3.0_unigene108037 SustainPine v3.0 307
AutoFact: Unassigned protein
FL-Next: Isoform 2 of Histone-lysine N-methyltransferase EZ2 OS=Zea mays GN=EZ2 0.0
Sma3: SET domain protein 2.68e-11
Internal
sp_v3.0_unigene108339 SustainPine v3.0 264
AutoFact: histone methyltransferase [Arabidopsis thaliana] sp|O22781.1|SUVH2_ARATH RecName: Full=Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2; AltName: Full=Cytosine-HMTase 2; AltName: Full=H3-K27-HMTase 2; 2.0e-23
FL-Next: sp=Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SET domain protein 5.82e-08
Internal
sp_v3.0_unigene108832 SustainPine v3.0 693
AutoFact: Transcription initiation factor tfiid, putative n=1 Tax=Ricinus communis RepID=B9S9F7_RICCO 6.0e-15
FL-Next: sp=Transcription initiation factor TFIID subunit 1-A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone acetyltransferase 1.512e-06
N-terminus
sp_v3.0_unigene110889 SustainPine v3.0 348
AutoFact: DNA helicase INO80 complex-like 1 n=1 Tax=Arabidopsis thaliana RepID=F4J277_ARATH 0.0
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 9.252e-19
Internal
sp_v3.0_unigene111111 SustainPine v3.0 243
AutoFact: SET domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I5A8_POPTR 3.0e-27
FL-Next: sp=Histone-lysine N-methyltransferase ATX4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Trithorax, putative 1.362e-08
Internal
sp_v3.0_unigene115554 SustainPine v3.0 228
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Ricinus communis RepID=B9SPD5_RICCO 3.0e-28
FL-Next: Isoform 2 of DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica GN=MET1A 0.0
Sma3: Cytosine-specific methyltransferase 0.0
Internal
sp_v3.0_unigene118341 SustainPine v3.0 325
AutoFact: SET domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I5A8_POPTR 3.0e-28
FL-Next: sp=Histone-lysine N-methyltransferase ATX4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SET domain protein 7.678e-06
Internal
sp_v3.0_unigene123505 SustainPine v3.0 323
AutoFact: RecName: Full=Transcription initiation factor TFIID subunit 1; AltName: Full=TAFII250 dbj|BAD37451.1| putative HAC13 protein [Oryza sativa Japonica Group] dbj|BAD37604.1| putative HAC13 protein [Oryza sativa Japonica Group] 1.0e-27
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.688e-09
Internal
sp_v3.0_unigene125390 SustainPine v3.0 273
AutoFact: Transcription initiation factor TFIID subunit 1 n=5 Tax=Oryza sativa RepID=TAF1_ORYSJ 3.0e-28
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.823e-09
Internal
sp_v3.0_unigene126442 SustainPine v3.0 199
AutoFact: putative chromatin complex subunit A101 [Oryza sativa Japonica Group] 1.0e-15
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SWI2/SNF2-like protein 1.041e-12
Internal
sp_v3.0_unigene128747 SustainPine v3.0 341
AutoFact: DNA (cytosine-5)-methyltransferase 1B n=9 Tax=Poaceae RepID=DNM1B_ORYSJ 3.0e-38
FL-Next: Isoform 3 of DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B 0.0
Sma3: Cytosine-specific methyltransferase 0.0
C-terminus
sp_v3.0_unigene131850 SustainPine v3.0 458
AutoFact: Histone chaperone n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPE1_PHYPA 3.00004e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone chaperone 6.501e-16
N-terminus
sp_v3.0_unigene131962 SustainPine v3.0 128
AutoFact: DNA (cytosine-5)-methyltransferase 1 n=3 Tax=Arabidopsis RepID=DNMT1_ARATH 7.0e-08
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cytosine-specific methyltransferase 8.105e-07
Internal
sp_v3.0_unigene134918 SustainPine v3.0 367
AutoFact: [KB] COG5137 Histone chaperone involved in gene silencing 4.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone chaperone 4.946e-16
C-terminus
sp_v3.0_unigene138959 SustainPine v3.0 274
AutoFact: DNA (cytosine-5)-methyltransferase 1 n=3 Tax=Arabidopsis RepID=DNMT1_ARATH 3.0e-35
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cytosine-specific methyltransferase 0.0
Internal
sp_v3.0_unigene142307 SustainPine v3.0 925
AutoFact: nucleosome assembly protein 1-like protein 4 [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group A 9.835e-09
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain