Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA mediated transformation

Term: GO:0009294  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene43699 SustainPine v3.0 386
AutoFact: Histone-lysine n-methyltransferase, suvh, putative n=1 Tax=Ricinus communis RepID=B9SZ00_RICCO 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone-lysine n-methyltransferase, suvh, putative 6.06e-10
Internal
sp_v3.0_unigene44054 SustainPine v3.0 747
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Ricinus communis RepID=B9RWB0_RICCO 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cytosine-specific methyltransferase 0.0
Internal
sp_v3.0_unigene48118 SustainPine v3.0 334
AutoFact: DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp|Q9FNI6.1|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj|BAB11681.1| DNA repa 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 5.61e-14
Internal
sp_v3.0_unigene48330 SustainPine v3.0 517
AutoFact: enhancer of zeste-like 1 [Zea mays] 8.0e-30
FL-Next: sp=Histone-lysine N-methyltransferase EZ1; Zea mays (Maize). 0.0
Sma3: SET domain protein 2.878e-11
Internal
sp_v3.0_unigene49588 SustainPine v3.0 1527
AutoFact: Histone-lysine n-methyltransferase, suvh, putative n=1 Tax=Ricinus communis RepID=B9SHW2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SET domain protein 8.329e-20
Putative N-terminus
sp_v3.0_unigene50040 SustainPine v3.0 265
AutoFact: histone-lysine N-methyltransferase ATX5 [Arabidopsis thaliana] sp|Q8GZ42.1|ATX5_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX5; AltName: Full=Protein SET DOMAIN GROUP 29; AltName: Full=Trithorax-homolog protein 5; Short=TRX-homolog protein 5 1.0e-13
FL-Next: sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene53128 SustainPine v3.0 280
AutoFact: SET domain protein n=1 Tax=Populus trichocarpa RepID=B9I9I5_POPTR 1.99965e-42
FL-Next: sp=Histone-lysine N-methyltransferase EZA1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SET domain protein 5.267e-11
Internal
sp_v3.0_unigene54569 SustainPine v3.0 223
AutoFact: Cytosine-specific methyltransferase n=6 Tax=Nicotiana RepID=A0A9R7_TOBAC 2.0e-09
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cytosine-specific methyltransferase 1.664e-18
Internal
sp_v3.0_unigene56591 SustainPine v3.0 102
AutoFact: Putative DNA repair protein n=1 Tax=Ipomoea trifida RepID=Q6JJ38_IPOTF 5.0e-11
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 2.361e-07
Internal
sp_v3.0_unigene60787 SustainPine v3.0 237
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 2.0e-15
FL-Next: sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 5.985e-09
Internal
sp_v3.0_unigene63155 SustainPine v3.0 202
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RVR7_PHYPA 7.0e-15
FL-Next: sp=DNA (cytosine-5)-methyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cytosine-specific methyltransferase 0.0
Internal
sp_v3.0_unigene63167 SustainPine v3.0 135
AutoFact: Nucleosome/chromatin assembly factor group A n=2 Tax=Zea mays RepID=Q8L8G5_MAIZE 7.0e-08
FL-Next: tr=Nucleosome assembly protein 1-like protein 2; Oryza sativa (Rice). 0.0
Sma3: Nucleosome assembly protein 1-like protein 2 2.212e-09
Internal
sp_v3.0_unigene67240 SustainPine v3.0 144
AutoFact: Histone-lysine N-methyltransferase n=3 Tax=Andropogoneae RepID=C5XT28_SORBI 4.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone-lysine N-methyltransferase ATXR6, putative 5.379e-09
Internal
sp_v3.0_unigene67491 SustainPine v3.0 230
AutoFact: Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I3M5_POPTR 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Global transcription factor group 1.623e-11
Internal
sp_v3.0_unigene68444 SustainPine v3.0 204
AutoFact: DNA (cytosine-5)-methyltransferase 1B n=9 Tax=Poaceae RepID=DNM1B_ORYSJ 9.0e-16
FL-Next: Isoform 3 of DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B 0.0
Sma3: Cytosine-specific methyltransferase 0.0
C-terminus
sp_v3.0_unigene68735 SustainPine v3.0 253
AutoFact: DNA repair helicase rad5,16, putative n=1 Tax=Ricinus communis RepID=B9STJ2_RICCO 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA repair helicase rad5,16, putative 2.683e-07
Internal
sp_v3.0_unigene69573 SustainPine v3.0 183
AutoFact: Histone deacetylase n=2 Tax=Populus trichocarpa RepID=B9MZ37_POPTR 4.0e-17
FL-Next: sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 4.747e-26
Internal
sp_v3.0_unigene70073 SustainPine v3.0 370
AutoFact: Histone methylase n=2 Tax=Andropogoneae RepID=B3VSN3_MAIZE 1.0e-27
FL-Next: sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Trithorax, putative 1.443e-08
C-terminus
sp_v3.0_unigene71925 SustainPine v3.0 158
AutoFact: Enhancer of zeste, ezh, putative n=1 Tax=Ricinus communis RepID=B9RNE0_RICCO 1.0e-16
FL-Next: sp=Histone-lysine N-methyltransferase EZ1; Zea mays (Maize). 0.0
Sma3: Enhancer of zeste, ezh, putative 1.062e-08
Internal
sp_v3.0_unigene73199 SustainPine v3.0 233
AutoFact: DNA (cytosine-5)-methyltransferase 1B n=9 Tax=Poaceae RepID=DNM1B_ORYSJ 2.0e-13
FL-Next: Isoform 3 of DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B 0.0
Sma3: Cytosine-specific methyltransferase 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain