Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene51650 SustainPine v3.0 157
AutoFact: 5'-3' exoribonuclease 3 [Arabidopsis thaliana] sp|Q9FQ03.1|XRN3_ARATH RecName: Full=5'-3' exoribonuclease 3; AltName: Full=Protein EXORIBONUCLEASE 3 gb|AAG40732.1|AF286719_1 XRN3 [Arabidopsis thaliana] gb|AEE35742.1| 5'-3' exoribonuclease 3 [Arabidopsis t 8.0e-12
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Sma3: 5'->3' exoribonuclease, putative 4.798e-08
Internal
sp_v3.0_unigene51833 SustainPine v3.0 236
AutoFact: Unassigned protein
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene52260 SustainPine v3.0 487
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor gb|AAF 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene52533 SustainPine v3.0 394
AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein polypeptide G 5.391e-13
Putative Complete
sp_v3.0_unigene54776 SustainPine v3.0 331
AutoFact: Sm snRNP core protein Smf1 n=1 Tax=Coccidioides posadasii str. Silveira RepID=E9D5W6_COCPS 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein f, putative 6.229e-09
Complete
sp_v3.0_unigene54997 SustainPine v3.0 176
AutoFact: U2 auxiliary factor small subunit [Arabidopsis thaliana] 7.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 1.301e-11
Internal
sp_v3.0_unigene55903 SustainPine v3.0 313
AutoFact: Polypyrimidine tract-binding protein homolog 3 n=4 Tax=Arabidopsis RepID=PTBP3_ARATH 5.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene56328 SustainPine v3.0 484
AutoFact: putative cleavage and polyadenylation specificity factor 160 kDa subunit [Arabidopsis thaliana] 0.0
FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 7.054e-10
Internal
sp_v3.0_unigene57628 SustainPine v3.0 352
AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene59105 SustainPine v3.0 262
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor gb|AAF 2.0e-08
FL-Next: sp=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene59465 SustainPine v3.0 459
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 2.94273e-44
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene59952 SustainPine v3.0 439
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor gb|AAF 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene61289 SustainPine v3.0 199
AutoFact: WD-repeat protein 33 n=3 Tax=Andropogoneae RepID=B6SPQ9_MAIZE 2.0e-20
FL-Next: sp=Flowering time control protein FY; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene61635 SustainPine v3.0 181
AutoFact: Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Arabidopsis RepID=CPSF1_ARATH 4.0e-07
FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative cleavage and polyadenylation specificity factor 160 kDa subunit 8.285e-06
N-terminus
sp_v3.0_unigene61692 SustainPine v3.0 243
AutoFact: RNA helicase - like protein [Arabidopsis thaliana] emb|CAB78848.1| RNA helicase-like protein [Arabidopsis thaliana] 5.0e-30
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.335e-21
Internal
sp_v3.0_unigene62140 SustainPine v3.0 347
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.422e-11
Internal
sp_v3.0_unigene62332 SustainPine v3.0 324
AutoFact: Poly(A)-binding protein n=1 Tax=Daucus carota RepID=Q9AT32_DAUCA 5.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 8.148e-23
N-terminus
sp_v3.0_unigene62406 SustainPine v3.0 163
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene63390 SustainPine v3.0 277
AutoFact: [RTKL] COG0515 Serine/threonine protein kinase 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CDKC 2.165e-16
Internal
sp_v3.0_unigene63475 SustainPine v3.0 220
AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 1.468e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain