Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene159298 SustainPine v3.0 426
AutoFact: Cell division control protein 2-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CAP3_THAPS 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Mitogen-activated protein kinase 1.012e-11
Internal
sp_v3.0_unigene159369 SustainPine v3.0 136
AutoFact: putative RNA helicase (ISS) [Ostreococcus tauri] emb|CAL53470.1| putative RNA helicase (ISS) [Ostreococcus tauri] 4.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 6 1.165e-08
Internal
sp_v3.0_unigene160805 SustainPine v3.0 537
AutoFact: Ribosomal protein L13 containing protein n=2 Tax=Tetrahymena thermophila RepID=Q23YQ6_TETTH 0.0
FL-Next: tr=Cdc2Pa protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: CDKC 1.188e-15
Internal
sp_v3.0_unigene161271 SustainPine v3.0 462
AutoFact: DEAD-box ATP-dependent RNA helicase 21 n=2 Tax=Arabidopsis RepID=RH21_ARATH 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 21 3.385e-08
C-terminus
sp_v3.0_unigene162510 SustainPine v3.0 143
AutoFact: pre-mRNA branch site protein p14 [Arabidopsis thaliana] ref|XP_002873554.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] sp|Q9FMP4.1|PM14_ARATH RecName: Full=Pre-mRNA branch site p14-like protein dbj|BAB10037.1| unnamed prot 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 1.746e-09
Putative C-terminus
sp_v3.0_unigene162843 SustainPine v3.0 464
AutoFact: pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.716e-16
Internal
sp_v3.0_unigene162871 SustainPine v3.0 218
AutoFact: putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] 3.0e-15
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene163408 SustainPine v3.0 407
AutoFact: ATP-dependent RNA helicase (Fragment) n=1 Tax=Cucumis melo subsp. melo RepID=E5GBQ6_CUCME 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.112e-31
Internal
sp_v3.0_unigene165261 SustainPine v3.0 188
AutoFact: tRNA-splicing endonuclease subunit Sen2-2 [Arabidopsis thaliana] gb|AED97297.1| tRNA-splicing endonuclease subunit Sen2-2 [Arabidopsis thaliana] 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene165805 SustainPine v3.0 476
AutoFact: Splicing factor U2af small subunit B [Arabidopsis thaliana] ref|NP_974870.1| Splicing factor U2af small subunit B [Arabidopsis thaliana] sp|Q9FMY5.1|U2AFB_ARATH RecName: Full=Splicing factor U2af small subunit B; AltName: Full=U2 auxiliary factor 35 kDa s 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.746e-11
N-terminus
sp_v3.0_unigene166042 SustainPine v3.0 351
AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
N-terminus
sp_v3.0_unigene166753 SustainPine v3.0 128
AutoFact: Splicing factor U2AF 26 kDa subunit n=2 Tax=Agaricales RepID=A8N5I3_COPC7 6.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.196e-11
N-terminus
sp_v3.0_unigene166955 SustainPine v3.0 497
AutoFact: pfam01423, LSM, LSM domain 3.0e-13
FL-Next: tr=Glycine rich protein-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
Complete
sp_v3.0_unigene171933 SustainPine v3.0 418
AutoFact: DUF1777 multi-domain protein 7.0e-10
Sma3: ATP-dependent RNA helicase DDX23 2.447e-09
coding
sp_v3.0_unigene183065 SustainPine v3.0 646
AutoFact: LSM domain-containing protein n=1 Tax=Glomerella graminicola M1.001 RepID=E3QWF0_COLGM 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein f, putative 6.229e-09
Complete
sp_v3.0_unigene183287 SustainPine v3.0 542
AutoFact: serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] gb|AEE79109.1| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 1.158e-15
Internal
sp_v3.0_unigene184477 SustainPine v3.0 473
AutoFact: dead-box helicase [Platanus x acerifolia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 1.77e-21
Putative C-terminus
sp_v3.0_unigene184878 SustainPine v3.0 345
AutoFact: putative polypyrimidine track-binding protein [Oryza sativa Japonica Group] 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative polypyrimidine track-binding protein 8.285e-06
C-terminus
sp_v3.0_unigene186721 SustainPine v3.0 1027
AutoFact: Peptidyl-tRNA hydrolase, mitochondrial n=2 Tax=Arabidopsis RepID=PTHM_ARATH 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-tRNA hydrolase, putative 7.32e-12
Putative Complete
sp_v3.0_unigene187728 SustainPine v3.0 264
AutoFact: serine/threonine-protein kinase AFC2 [Arabidopsis thaliana] sp|P51567.1|AFC2_ARATH RecName: Full=Serine/threonine-protein kinase AFC2 gb|AAA57118.1| protein kinase [Arabidopsis thaliana] dbj|BAA08214.1| protein kinase [Arabidopsis thaliana] emb|CAA22989.1 6.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 2.442e-16
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain