Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene152282 SustainPine v3.0 420
AutoFact: DEAD box helicase n=1 Tax=Ectocarpus siliculosus RepID=D8LJE9_ECTSI 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 3.009e-10
C-terminus
sp_v3.0_unigene152622 SustainPine v3.0 431
AutoFact: Polyadenylate-binding protein 1-B n=2 Tax=Phytophthora infestans T30-4 RepID=D0MV08_PHYIT 9.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 1.972e-13
Putative C-terminus
sp_v3.0_unigene152660 SustainPine v3.0 456
AutoFact: [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein f, putative 6.913e-09
C-terminus
sp_v3.0_unigene152768 SustainPine v3.0 445
AutoFact: Pre-mRNA branch site protein p14 n=3 Tax=Culicidae RepID=B0WN88_CULQU 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
Complete
sp_v3.0_unigene152906 SustainPine v3.0 413
AutoFact: Putative DEAD/DEAH box helicase n=1 Tax=Trichinella spiralis RepID=E5SYL4_TRISP 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 21 1.116e-07
C-terminus
sp_v3.0_unigene153552 SustainPine v3.0 475
AutoFact: Pre-mRNA branch site protein p14 n=23 Tax=Euteleostomi RepID=PM14_HUMAN 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
Complete
sp_v3.0_unigene153613 SustainPine v3.0 375
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 8.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative splicing factor 3.93e-07
C-terminus
sp_v3.0_unigene153704 SustainPine v3.0 236
AutoFact: Probable serine/threonine-protein kinase ireA n=1 Tax=Dictyostelium discoideum RepID=IREA_DICDI 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Chlorella variabilis (Green alga). 0.0
Sma3: Key regulator in ER unfolded protein response 9.747e-06
Internal
sp_v3.0_unigene153734 SustainPine v3.0 388
AutoFact: small nuclear ribonucleoprotein F [Arabidopsis thaliana] ref|XP_002867361.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp. lyrata] ref|XP_002885912.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp. lyrata] sp|Q9SUM2. 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein f, putative 6.913e-09
Putative Complete
sp_v3.0_unigene154600 SustainPine v3.0 278
AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated [Tribolium castaneum] 6.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.227e-13
Internal
sp_v3.0_unigene154723 SustainPine v3.0 365
AutoFact: U2 small nuclear RNA auxiliary factor 1 (Fragment) n=1 Tax=Microcosmus squamiger RepID=E3PQY0_9ASCI 9.99967e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 1.517e-11
Internal
sp_v3.0_unigene155756 SustainPine v3.0 425
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 6.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
Complete
sp_v3.0_unigene156294 SustainPine v3.0 223
AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 4.0e-24
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene156483 SustainPine v3.0 419
AutoFact: putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] 4.0e-32
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene156666 SustainPine v3.0 411
AutoFact: spliceosome associated protein-like [Arabidopsis thaliana] emb|CAB81273.1| spliceosome associated protein-like [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Spliceosome associated protein-like 7.485e-09
Internal
sp_v3.0_unigene157432 SustainPine v3.0 457
AutoFact: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Danio rerio] sp|Q6PC19.1|SSU72_DANRE RecName: Full=RNA polymerase II subunit A C-terminal domain phosphatase SSU72; Short=CTD phosphatase SSU72 gb|AAH59504.1| Zgc:73143 [Danio rerio] 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene158193 SustainPine v3.0 456
AutoFact: polypyrimidine tract binding protein-like [Danio rerio] 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene158226 SustainPine v3.0 256
AutoFact: pre-mRNA branch site protein p14 [Arabidopsis thaliana] ref|XP_002873554.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] sp|Q9FMP4.1|PM14_ARATH RecName: Full=Pre-mRNA branch site p14-like protein dbj|BAB10037.1| unnamed prot 7.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
C-terminus
sp_v3.0_unigene158826 SustainPine v3.0 413
AutoFact: PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like n=1 Tax=Monodelphis domestica RepID=UPI00020F7832 2.8026e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene159102 SustainPine v3.0 265
AutoFact: glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40] ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus flavus NRRL3357] dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40] gb|EED53406.1| heterogen 1.0e-21
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 7.776e-30
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain