Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene142259 SustainPine v3.0 1237
AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 7.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 4.849e-16
Complete
sp_v3.0_unigene142398 SustainPine v3.0 707
AutoFact: putative protein kinase PK12 [Oryza sativa Japonica Group] dbj|BAG89850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE54903.1| hypothetical protein OsJ_02427 [Oryza sativa Japonica Group] 9.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 9.422e-16
Putative C-terminus
sp_v3.0_unigene142994 SustainPine v3.0 226
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene143137 SustainPine v3.0 629
AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 1.153e-11
Internal
sp_v3.0_unigene143356 SustainPine v3.0 1621
AutoFact: Peptidyl-prolyl cis-trans isomerase, putative n=1 Tax=Ricinus communis RepID=B9RP81_RICCO 3.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase 9.698e-09
Putative C-terminus
sp_v3.0_unigene143614 SustainPine v3.0 373
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene143715 SustainPine v3.0 373
AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 6.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 6.017e-08
N-terminus
sp_v3.0_unigene144017 SustainPine v3.0 448
AutoFact: putative protein kinase PK12 [Oryza sativa Japonica Group] dbj|BAG89850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE54903.1| hypothetical protein OsJ_02427 [Oryza sativa Japonica Group] 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 1.366e-11
Internal
sp_v3.0_unigene144449 SustainPine v3.0 288
AutoFact: Protein kinase MK5 n=1 Tax=Mesembryanthemum crystallinum RepID=Q9M598_MESCR 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 1.795e-16
Putative Complete
sp_v3.0_unigene144499 SustainPine v3.0 970
AutoFact: Pre-mRNA-processing factor 19 [Arabidopsis thaliana] sp|Q94BR4.1|PR19A_ARATH RecName: Full=Pre-mRNA-processing factor 19 homolog 1; AltName: Full=MOS4-associated complex protein 3A; Short=MAC protein 3A; AltName: Full=Plant U-box protein 59; AltName: Full 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GAST1 protein, putative 1.287e-07
N-terminus
sp_v3.0_unigene145507 SustainPine v3.0 446
AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 4.129e-16
Putative N-terminus
sp_v3.0_unigene145926 SustainPine v3.0 1119
AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 8.32e-16
C-terminus
sp_v3.0_unigene145989 SustainPine v3.0 654
AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 6.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Afc, putative 4.591e-08
C-terminus
sp_v3.0_unigene146033 SustainPine v3.0 551
AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene147903 SustainPine v3.0 218
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor gb|AAF 2.0e-21
FL-Next: sp=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene148899 SustainPine v3.0 284
AutoFact: CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36264.1| unknown protein [Arabidopsis thaliana] gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis 4.0e-29
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene149692 SustainPine v3.0 162
AutoFact: Unassigned protein
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: CRS2-associated factor 2, mitochondrial 2.258e-09
Internal
sp_v3.0_unigene150750 SustainPine v3.0 236
AutoFact: PREDICTED: similar to Sm protein G, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A59 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein polypeptide G 4.83e-13
Putative Complete
sp_v3.0_unigene151749 SustainPine v3.0 249
AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 9.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: snRNP-G 4.361e-09
C-terminus
sp_v3.0_unigene151867 SustainPine v3.0 427
AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein polypeptide G 4.921e-13
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain