Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene127224 SustainPine v3.0 1337
• AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 4.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 4.186e-16
Internal
sp_v3.0_unigene127304 SustainPine v3.0 1619
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene127524 SustainPine v3.0 1507
• AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 1.22e-15
C-terminus
sp_v3.0_unigene127592 SustainPine v3.0 1134
• AutoFact: Polypyrimidine tract binding protein, putative n=1 Tax=Ricinus communis RepID=B9T4F5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative polypyrimidine tract-binding protein 1.397e-08
C-terminus
sp_v3.0_unigene127832 SustainPine v3.0 1876
• AutoFact: serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] ref|NP_850695.2| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] ref|NP_001030853.1| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] sp|P51566.2|AFC1_ARATH RecName: Full=S 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 7.062e-16
Complete
sp_v3.0_unigene128206 SustainPine v3.0 598
• AutoFact: Polypyrimidine tract-binding protein homolog 3 n=4 Tax=Arabidopsis RepID=PTBP3_ARATH 7.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene128515 SustainPine v3.0 701
• AutoFact: PK12 protein kinase [Nicotiana tabacum] 1.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 4.017e-16
C-terminus
sp_v3.0_unigene128718 SustainPine v3.0 368
• AutoFact: pfam00149, Metallophos, Calcineurin-like phosphoesterase 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Lariat debranching enzyme 1.192e-13
N-terminus
sp_v3.0_unigene130124 SustainPine v3.0 537
• AutoFact: CRM family member 2 [Arabidopsis thaliana] gb|AAM97013.1| unknown protein [Arabidopsis thaliana] gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana] gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana] 2.99878e-43
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
• Sma3: Protein CHLOROPLAST RNA SPLICING 1 1.483e-12
Internal
sp_v3.0_unigene131190 SustainPine v3.0 602
• AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene131364 SustainPine v3.0 362
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 1.00053e-42
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene131612 SustainPine v3.0 530
• AutoFact: U2 auxiliary factor small subunit [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.089e-11
Putative N-terminus
sp_v3.0_unigene131711 SustainPine v3.0 340
• AutoFact: RNA binding motif protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBJ9_CUCME 5.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene131756 SustainPine v3.0 483
• AutoFact: Protein kinase MK5 n=1 Tax=Mesembryanthemum crystallinum RepID=Q9M598_MESCR 4.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 1.005e-11
C-terminus
sp_v3.0_unigene133243 SustainPine v3.0 399
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor gb|AAF 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene133985 SustainPine v3.0 269
• AutoFact: RecName: Full=Probable cleavage and polyadenylation specificity factor subunit 1; AltName: Full=Cleavage and polyadenylation specificity factor 160 kDa subunit; Short=CPSF 160 kDa subunit emb|CAD39979.2| OSJNBa0032B23.5 [Oryza sativa Japonica Group] 3.0e-16
• FL-Next: sp=Probable cleavage and polyadenylation specificity factor subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 7.054e-10
C-terminus
sp_v3.0_unigene134597 SustainPine v3.0 241
• AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 6.0e-15
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene136190 SustainPine v3.0 226
• AutoFact: CRM family member 2 [Arabidopsis thaliana] gb|AAM97013.1| unknown protein [Arabidopsis thaliana] gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana] gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana] 2.0e-23
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Protein CHLOROPLAST RNA SPLICING 1 1.445e-12
Internal
sp_v3.0_unigene140367 SustainPine v3.0 945
• AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 9.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 9.156e-08
C-terminus
sp_v3.0_unigene140437 SustainPine v3.0 1020
• AutoFact: Putative U2 snRNP auxiliary factor (Fragment) n=1 Tax=Chenopodium rubrum RepID=Q1H8Q9_CHERU 9.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Splicing factor U2af 38 kDa subunit 2.9e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain