Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene103109 SustainPine v3.0 542
• AutoFact: Unassigned protein
• FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene103356 SustainPine v3.0 430
• AutoFact: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase n=2 Tax=Arabidopsis thaliana RepID=DHX8_ARATH 4.99983e-42
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative RNA helicase 4.763e-07
Internal
sp_v3.0_unigene104535 SustainPine v3.0 366
• AutoFact: endoribonuclease/protein kinase IRE1 [Arabidopsis thaliana] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene105982 SustainPine v3.0 241
• AutoFact: CRS2-associated factor 1 [Arabidopsis thaliana] sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAK76556.1| unkn 4.0e-25
• FL-Next: sp=CRS2-associated factor 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 4.227e-13
Internal
sp_v3.0_unigene106519 SustainPine v3.0 242
• AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-26
• FL-Next: sp=CRS2-associated factor 1, chloroplastic; Zea mays (Maize). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 7.939e-13
Internal
sp_v3.0_unigene108714 SustainPine v3.0 312
• AutoFact: CRS2-associated factor 2, chloroplastic n=2 Tax=Arabidopsis RepID=CAF2P_ARATH 1.0e-38
• FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 1.134e-12
Internal
sp_v3.0_unigene108984 SustainPine v3.0 424
• AutoFact: cleavage and polyadenylation specificity factor subunit [Arabidopsis thaliana] 2.0e-28
• FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 7.054e-10
Internal
sp_v3.0_unigene110720 SustainPine v3.0 189
• AutoFact: Maturase K (Fragment) n=1 Tax=Pinus thunbergii RepID=E5KG06_PINTH 2.0e-28
• FL-Next: sp=Maturase K; Pinus caribaea var. caribaea. Plastid; Chloroplast. 0.0
• Sma3: Maturase K 8.009e-06
Internal
sp_v3.0_unigene112282 SustainPine v3.0 317
• AutoFact: ATP-dependent RNA helicase, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C7G2_ARATH 8.99998e-41
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.012e-24
Internal
sp_v3.0_unigene112413 SustainPine v3.0 305
• AutoFact: Plant RNA cleavage stimulation factor, putative n=1 Tax=Ricinus communis RepID=B9S078_RICCO 8.0e-36
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene114537 SustainPine v3.0 490
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35030, mitochondrial; Flags: Precursor gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana] gb|A 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 2.725e-22
Internal
sp_v3.0_unigene115006 SustainPine v3.0 517
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T7E9_RICCO 6.00036e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 6.645e-15
Internal
sp_v3.0_unigene116330 SustainPine v3.0 363
• AutoFact: [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog 5.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein f, putative 6.913e-09
Complete
sp_v3.0_unigene122167 SustainPine v3.0 440
• AutoFact: putative cleavage and polyadenylation specificity factor 160 kDa subunit [Arabidopsis thaliana] 0.0
• FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 8.982e-10
Internal
sp_v3.0_unigene122445 SustainPine v3.0 109
• AutoFact: Maturase K n=58 Tax=Pinus RepID=MATK_PINCE 1.0e-06
• FL-Next: sp=Maturase K 1; Pinus morrisonicola. Plastid; Chloroplast. 0.0
• Sma3: Intron maturase 1.344e-06
Internal
sp_v3.0_unigene123926 SustainPine v3.0 302
• AutoFact: Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Arabidopsis RepID=CPSF1_ARATH 3.0e-30
• FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 1.248e-09
Internal
sp_v3.0_unigene125986 SustainPine v3.0 417
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor gb|AAF 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene126688 SustainPine v3.0 791
• AutoFact: Nucleic acid-binding protein n=1 Tax=Zea mays RepID=Q41834_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribonucleoprotein 1.048e-16
C-terminus
sp_v3.0_unigene126851 SustainPine v3.0 977
• AutoFact: nucleic acid binding protein1 [Zea mays] gb|AAA33486.1| nucleic acid-binding protein [Zea mays] gb|ACG38158.1| ribonucleoprotein [Zea mays] gb|ACL52389.1| unknown [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribonucleoprotein 3.69e-17
C-terminus
sp_v3.0_unigene126946 SustainPine v3.0 309
• AutoFact: polypyrimidine track-binding protein homologue [Cicer arietinum] 5.0e-14
• FL-Next: sp=Polypyrimidine tract-binding protein homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain