Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene75711 SustainPine v3.0 317
• AutoFact: cleavage stimulation factor 77 [Arabidopsis thaliana] 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene76036 SustainPine v3.0 338
• AutoFact: RecName: Full=Serine/threonine-protein kinase SSN3; AltName: Full=Cyclin-dependent kinase 8 gb|AAY99646.1| Fck1 [Gibberella moniliformis] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CDKC 2.585e-13
Internal
sp_v3.0_unigene76519 SustainPine v3.0 250
• AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 9.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 4.723e-16
Internal
sp_v3.0_unigene77207 SustainPine v3.0 260
• AutoFact: glycine-rich RNA binding protein [Cryptococcus neoformans var. neoformans JEC21] gb|AAW44675.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans var. neoformans JEC21] 8.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribonucleoprotein 1.187e-14
Internal
sp_v3.0_unigene77499 SustainPine v3.0 477
• AutoFact: spliceosome assembly-related protein [Cryptococcus neoformans var. neoformans JEC21] ref|XP_774184.1| hypothetical protein CNBG1660 [Cryptococcus neoformans var. neoformans B-3501A] gb|EAL19537.1| hypothetical protein CNBG1660 [Cryptococcus neoformans var 0.0
• FL-Next: tr=Splicing factor 3B subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Sma3: Spliceosome associated protein-like 7.054e-09
Internal
sp_v3.0_unigene77691 SustainPine v3.0 278
• AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.31e-13
N-terminus
sp_v3.0_unigene77951 SustainPine v3.0 289
• AutoFact: Related to U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Sporisorium reilianum RepID=E6ZPV4_9BASI 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 2.848e-13
N-terminus
sp_v3.0_unigene78071 SustainPine v3.0 235
• AutoFact: Splicing factor 3B subunit, putative n=1 Tax=Ricinus communis RepID=B9RZ56_RICCO 3.0e-25
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Sma3: Spliceosome associated protein-like 5.965e-09
Internal
sp_v3.0_unigene79121 SustainPine v3.0 288
• AutoFact: putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group] dbj|BAD30726.1| putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group] 9.00054e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CDKC 4.199e-16
Internal
sp_v3.0_unigene79157 SustainPine v3.0 379
• AutoFact: CMGC/CDK/CDC2 protein kinase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8PBQ1_COPC7 0.0
• FL-Next: tr=Cdc2Pa protein; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: CDKC 1.904e-15
Internal
sp_v3.0_unigene81227 SustainPine v3.0 242
• AutoFact: ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130] gb|EAU89171.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 6 9.382e-08
Putative C-terminus
sp_v3.0_unigene81530 SustainPine v3.0 179
• AutoFact: ATP-dependent RNA helicase, putative-related [Oryza sativa Japonica Group] gb|AAX96100.1| Similar to ATP-dependent RNA helicase, putative [Oryza sativa Japonica Group] 2.0e-20
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 7.699e-24
Internal
sp_v3.0_unigene86353 SustainPine v3.0 531
• AutoFact: Gag_spuma multi-domain protein 9.0e-15
coding
sp_v3.0_unigene86795 SustainPine v3.0 400
• AutoFact: DUF1777 multi-domain protein 8.0e-10
coding
sp_v3.0_unigene93599 SustainPine v3.0 1005
• AutoFact: pre-mRNA splicing factor domain-containing protein [Arabidopsis thaliana] gb|AAC16071.1| expressed protein [Arabidopsis thaliana] gb|AAK74011.1| At2g44200/F6E13.34 [Arabidopsis thaliana] gb|AAM14905.1| expressed protein [Arabidopsis thaliana] gb|AAM47345. 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SRM102 7.797e-06
C-terminus
sp_v3.0_unigene93773 SustainPine v3.0 1049
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.307e-11
C-terminus
sp_v3.0_unigene94039 SustainPine v3.0 504
• AutoFact: Putative polypyrimidine track-binding protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5TKN2_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene94070 SustainPine v3.0 1242
• AutoFact: Cyclin-dependent kinase G-2 n=4 Tax=Oryza sativa RepID=CDKG2_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cyclin dependent kinase 2.834e-13
C-terminus
sp_v3.0_unigene94116 SustainPine v3.0 1066
• AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 5.171e-08
Putative Complete
sp_v3.0_unigene95589 SustainPine v3.0 511
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor gb|AAF 9.0e-34
• FL-Next: sp=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain