Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: tRNA splicing, via endonucleolytic cleavage and ligation

Term: GO:0006388  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene168 SustainPine v3.0 1814
AutoFact: tRNA intron endonuclease [Arabidopsis thaliana] dbj|BAA88628.1| tRNA intron endonuclease [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1353 SustainPine v3.0 1720
AutoFact: RNA ligase isoform 1 [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene8338 SustainPine v3.0 1193
AutoFact: putative tRNA 2'phosphotransferase [Arabidopsis thaliana] gb|AEC10539.1| putative tRNA 2'phosphotransferase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene15797 SustainPine v3.0 1487
AutoFact: putative tRNA 2'phosphotransferase [Arabidopsis thaliana] gb|AEC10539.1| putative tRNA 2'phosphotransferase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene26259 SustainPine v3.0 497
AutoFact: [J] COG1859 RNA:NAD 2'-phosphotransferase 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene33442 SustainPine v3.0 841
AutoFact: Cyclic phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9S8G6_RICCO 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cyclic phosphodiesterase 2.608e-09
Complete
sp_v3.0_unigene38874 SustainPine v3.0 558
AutoFact: RNA ligase n=3 Tax=Arabidopsis RepID=Q0WL81_ARATH 0.0
FL-Next: tr=RNA ligase isoform; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: RNA ligase isoform 3 5.586e-10
Internal
sp_v3.0_unigene43495 SustainPine v3.0 170
AutoFact: RNA ligase isoform 1 [Triticum aestivum] 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene44142 SustainPine v3.0 860
AutoFact: RNA ligase isoform 1 [Triticum aestivum] 0.0
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal
sp_v3.0_unigene58440 SustainPine v3.0 468
AutoFact: RNA ligase [Arabidopsis thaliana] ref|NP_001154320.1| RNA ligase [Arabidopsis thaliana] dbj|BAF02126.1| translation elongation factor EF-1 alpha [Arabidopsis thaliana] gb|AEE28210.1| RNA ligase [Arabidopsis thaliana] gb|AEE28211.1| RNA ligase [Arabidopsis 3.0e-38
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene61424 SustainPine v3.0 231
AutoFact: putative tRNA 2'phosphotransferase [Arabidopsis thaliana] gb|AEC10539.1| putative tRNA 2'phosphotransferase [Arabidopsis thaliana] 3.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene63722 SustainPine v3.0 186
AutoFact: RNA ligase n=3 Tax=Arabidopsis RepID=Q0WL81_ARATH 2.0e-23
FL-Next: tr=RNA ligase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene66347 SustainPine v3.0 421
AutoFact: putative tRNA 2'phosphotransferase [Arabidopsis thaliana] gb|AEC10539.1| putative tRNA 2'phosphotransferase [Arabidopsis thaliana] 4.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene94287 SustainPine v3.0 877
AutoFact: tRNA intron endonuclease, catalytic C-terminal [Medicago truncatula] 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene94696 SustainPine v3.0 482
AutoFact: RNA ligase isoform 1 [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene101290 SustainPine v3.0 781
AutoFact: RNA ligase isoform 1 [Triticum aestivum] 0.0
FL-Next: tr=Translation elongation factor EF-1 alpha; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene105720 SustainPine v3.0 484
AutoFact: RNA ligase [Arabidopsis thaliana] ref|NP_001154320.1| RNA ligase [Arabidopsis thaliana] dbj|BAF02126.1| translation elongation factor EF-1 alpha [Arabidopsis thaliana] gb|AEE28210.1| RNA ligase [Arabidopsis thaliana] gb|AEE28211.1| RNA ligase [Arabidopsis 4.0e-37
FL-Next: tr=RNA ligase isoform; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: RNA ligase isoform 3 5.586e-10
Internal
sp_v3.0_unigene124969 SustainPine v3.0 560
AutoFact: RNA ligase isoform 1 [Triticum aestivum] 0.0
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal
sp_v3.0_unigene148756 SustainPine v3.0 520
AutoFact: putative tRNA 2'phosphotransferase [Arabidopsis thaliana] gb|AEC10539.1| putative tRNA 2'phosphotransferase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene160017 SustainPine v3.0 167
AutoFact: RNA ligase isoform 1 [Triticum aestivum] 6.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain