Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA ligase, ATP-dependent, conserved site

Term: IPR016059  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene101179 SustainPine v3.0 286
• AutoFact: Decrease in DNA methylation 1 n=1 Tax=Brassica rapa RepID=B2DC40_BRACM 4.0e-28
• FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SWI2/SNF2-like protein 2.195e-12
Internal
sp_v3.0_unigene103454 SustainPine v3.0 423
• AutoFact: ISWI chromatin remodeling complex ATPase ISW1, putative n=1 Tax=Ricinus communis RepID=B9S6I7_RICCO 3.0e-36
• FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SWI2/SNF2-like protein 6.4e-12
Internal
sp_v3.0_unigene104254 SustainPine v3.0 954
• AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA Helicase 2.996e-17
Putative C-terminus
sp_v3.0_unigene104434 SustainPine v3.0 947
• AutoFact: Ethylene-responsive transcription factor 1A n=1 Tax=Medicago truncatula RepID=A9P6A4_MEDTR 6.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 2.45227e-43
C-terminus
sp_v3.0_unigene105045 SustainPine v3.0 228
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Zinc finger protein, putative 8.679e-09
Internal
sp_v3.0_unigene108330 SustainPine v3.0 254
• AutoFact: Unassigned protein
• FL-Next: sp=Inactive poly [ADP-ribose] polymerase RCD1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene108915 SustainPine v3.0 426
• AutoFact: tetratricopeptide repeat (TPR)-containing protein-like [Oryza sativa Japonica Group] dbj|BAD27948.1| tetratricopeptide repeat (TPR)-containing protein-like [Oryza sativa Japonica Group] 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Putative C-terminus
sp_v3.0_unigene114762 SustainPine v3.0 427
• AutoFact: pfam12697, Abhydrolase_6, Alpha/beta hydrolase family 0.0001
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Monoglyceride lipase, putative 4.745e-08
Internal
sp_v3.0_unigene117539 SustainPine v3.0 326
• AutoFact: Ethylene-responsive transcription factor, putative n=1 Tax=Ricinus communis RepID=B9T1Y1_RICCO 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 2.516e-38
N-terminus
sp_v3.0_unigene119424 SustainPine v3.0 778
• AutoFact: Abietadiene synthase, chloroplastic n=1 Tax=Abies grandis RepID=TPSDV_ABIGR 0.0
• FL-Next: sp=Levopimaradiene synthase, chloroplastic; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Copalyl diphosphate synthase 3.77e-29
Internal
sp_v3.0_unigene121256 SustainPine v3.0 392
• AutoFact: DNA ligase n=1 Tax=Oryza sativa Japonica Group RepID=B9EYN2_ORYSJ 2.0e-15
• FL-Next: sp=DNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene124006 SustainPine v3.0 409
• AutoFact: DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI 7.0e-28
• FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
• Sma3: DNA ligase 2.193e-16
C-terminus
sp_v3.0_unigene125766 SustainPine v3.0 241
• AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 1.0e-23
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 3.617e-10
Internal
sp_v3.0_unigene126810 SustainPine v3.0 263
• AutoFact: ERF transcription factor 4 n=1 Tax=Vitis pseudoreticulata RepID=D3Y3F3_9ROSI 4.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 0.0
Internal
sp_v3.0_unigene127667 SustainPine v3.0 522
• AutoFact: putative phospholipase [Arabidopsis thaliana] gb|AAC27833.1| putative phospholipase [Arabidopsis thaliana] 2.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative phospholipase 3.123e-17
C-terminus
sp_v3.0_unigene128167 SustainPine v3.0 541
• AutoFact: Abietadiene synthase, chloroplastic n=1 Tax=Abies grandis RepID=TPSDV_ABIGR 0.0
• FL-Next: sp=Levopimaradiene synthase, chloroplastic; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Ent-copalyl diphosphate synthase 2.952e-29
Internal
sp_v3.0_unigene129440 SustainPine v3.0 471
• AutoFact: ERF/AP2 transcription factor n=1 Tax=Arabidopsis thaliana RepID=F4K831_ARATH 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 3.408e-29
Internal
sp_v3.0_unigene131248 SustainPine v3.0 342
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene131367 SustainPine v3.0 776
• AutoFact: Levopimaradiene synthase, chloroplastic n=2 Tax=Pinus RepID=TPSD1_PINTA 0.0
• FL-Next: sp=Levopimaradiene synthase, chloroplastic; Pinus taeda (Loblolly pine). 0.0
• Sma3: Copalyl diphosphate synthase 1.208e-36
N-terminus
sp_v3.0_unigene133034 SustainPine v3.0 465
• AutoFact: DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp|Q8RXS6.2|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb|AEE79637.1| DNA helicase INO80 complex-like 1 [Arabidopsis tha 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromatin remodeling complex subunit 1.062e-24
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain