Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA ligase, ATP-dependent, conserved site

Term: IPR016059  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene69855 SustainPine v3.0 364
AutoFact: Ethylene-responsive transcription factor 1B, putative n=1 Tax=Ricinus communis RepID=B9S7J4_RICCO 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 0.0
Internal
sp_v3.0_unigene70237 SustainPine v3.0 461
AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L0Z5_MALDO 6.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 9.732e-25
Internal
sp_v3.0_unigene70399 SustainPine v3.0 285
AutoFact: Ethylene-responsive transcription factor 4 n=4 Tax=Nicotiana RepID=ERF4_NICSY 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 0.0
Putative N-terminus
sp_v3.0_unigene71231 SustainPine v3.0 373
AutoFact: Ethylene responsive element binding protein C1 n=1 Tax=Capsicum annuum RepID=Q32W75_CAPAN 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 0.0
N-terminus
sp_v3.0_unigene71861 SustainPine v3.0 295
AutoFact: DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI 2.0e-28
FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
Internal
sp_v3.0_unigene73188 SustainPine v3.0 330
AutoFact: Development related ERF protein n=4 Tax=Oryza sativa RepID=Q0JB99_ORYSJ 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 0.0
Internal
sp_v3.0_unigene73703 SustainPine v3.0 470
AutoFact: RecName: Full=Helicase SWR1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 2.257e-38
Internal
sp_v3.0_unigene76619 SustainPine v3.0 321
AutoFact: RAD26-like SNF2 family DNA-dependent ATPase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D7Q2_LACBS 1.0e-24
FL-Next: tr=GAGA-binding transcriptional activator; Pinus taeda (Loblolly pine). 0.0
Sma3: SNF2 super family 3.206e-32
Putative C-terminus
sp_v3.0_unigene76650 SustainPine v3.0 160
AutoFact: histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] gb|AAW70385.1| At4g36280 [Arabidopsis thaliana] gb|AEE86643.1| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] 1.0e-13
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: Zinc finger protein, putative 6.434e-09
Internal
sp_v3.0_unigene77818 SustainPine v3.0 362
AutoFact: Abietadiene synthase, chloroplastic n=1 Tax=Abies grandis RepID=TPSDV_ABIGR 0.0
FL-Next: sp=Levopimaradiene synthase, chloroplastic; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Copalyl diphosphate synthase 1.256e-29
Internal
sp_v3.0_unigene78547 SustainPine v3.0 159
AutoFact: Ethylene-responsive transcription factor ERF114 n=3 Tax=Arabidopsis RepID=EF114_ARATH 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 1.0776e-42
Internal
sp_v3.0_unigene80380 SustainPine v3.0 187
AutoFact: ATP synthase gamma chain (Fragment) n=1 Tax=Ixodes scapularis RepID=B7QJZ7_IXOSC 5.0e-17
FL-Next: sp=ATP synthase gamma chain; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP synthase gamma chain 0.0
C-terminus
sp_v3.0_unigene80496 SustainPine v3.0 263
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 3.0e-15
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 2.851e-07
Internal
sp_v3.0_unigene81638 SustainPine v3.0 142
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 3.0e-15
FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DNA ligase 7.815e-10
Internal
sp_v3.0_unigene93612 SustainPine v3.0 1821
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 9.648e-28
Putative Complete
sp_v3.0_unigene93720 SustainPine v3.0 1184
AutoFact: Ethylene responsive element binding protein 1 n=1 Tax=Gossypium barbadense RepID=A3FMG9_GOSBA 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 5.373e-37
Complete
sp_v3.0_unigene94757 SustainPine v3.0 846
AutoFact: Snm1 n=4 Tax=Oryza sativa RepID=Q5NSW7_ORYSJ 0.0
FL-Next: sp=DNA cross-link repair protein SNM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA cross-link repair protein pso2/snm1, putative 1.967e-08
Internal
sp_v3.0_unigene96087 SustainPine v3.0 2015
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 7.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: TPR domain protein 1.327e-08
Putative Complete
sp_v3.0_unigene98930 SustainPine v3.0 523
AutoFact: Levopimaradiene synthase, chloroplastic n=2 Tax=Pinus RepID=TPSD1_PINTA 0.0
FL-Next: tr=Putative abietadiene synthase; Pinus densiflora (Japanese red pine). 0.0
Sma3: Copalyl diphosphate synthase 8.02e-36
Internal
sp_v3.0_unigene99890 SustainPine v3.0 1513
AutoFact: Ethylene-responsive transcription factor 1A n=1 Tax=Medicago truncatula RepID=A9P6A4_MEDTR 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 2.238e-38
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain