Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA ligase, ATP-dependent, conserved site

Term: IPR016059  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene46193 SustainPine v3.0 557
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Zinc finger protein, putative 6.747e-07
Internal
sp_v3.0_unigene46988 SustainPine v3.0 2040
• AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 5.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TPR domain protein 1.069e-08
Putative Complete
sp_v3.0_unigene47866 SustainPine v3.0 1602
• AutoFact: serine/threonine-prot (ISS) [Ostreococcus tauri] emb|CAL57156.1| serine/threonine-prot (ISS) [Ostreococcus tauri] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Plasma membrane H+-ATPase 8.327e-24
Internal
sp_v3.0_unigene49564 SustainPine v3.0 892
• AutoFact: GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] dbj|BAB01471.1| alanine acetyl transferase-like protein [Arabidopsis thaliana] gb|ABN04781.1| At3g22560 [Arabidopsis thaliana] gb|AEE76653.1| GCN5-related N-acetyltransferase (G 8.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: N-acetyltransferase, putative 2.896e-10
Complete
sp_v3.0_unigene49946 SustainPine v3.0 278
• AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 2.0e-13
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene51208 SustainPine v3.0 343
• AutoFact: DNA ligase 4 n=2 Tax=Arabidopsis RepID=DNLI4_ARATH 4.99997e-41
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene52262 SustainPine v3.0 462
• AutoFact: ethylene-responsive transcription factor ERF084 [Arabidopsis thaliana] sp|Q9M8M5.1|ERF84_ARATH RecName: Full=Ethylene-responsive transcription factor ERF084 gb|AAF27133.1|AC018849_21 unknown protein; 25072-24302 [Arabidopsis thaliana] gb|AAT44911.1| putat 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 2.02894e-41
N-terminus
sp_v3.0_unigene53198 SustainPine v3.0 187
• AutoFact: Ent-copalyl diphosphate synthase n=3 Tax=Picea RepID=D2X8G0_PICGL 2.0e-28
• FL-Next: tr=Ent-copalyl diphosphate synthase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Ent-copalyl diphosphate synthase 1.417e-25
Internal
sp_v3.0_unigene53275 SustainPine v3.0 229
• AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 6.0e-31
• FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene53433 SustainPine v3.0 359
• AutoFact: Ethylene-responsive transcription factor 1B, putative 7.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 1.241e-36
Putative C-terminus
sp_v3.0_unigene55654 SustainPine v3.0 339
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene58055 SustainPine v3.0 417
• AutoFact: Dehydration responsive element binding protein n=2 Tax=Trifolium repens RepID=D3YBE7_TRIRP 8.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 1.59748e-43
N-terminus
sp_v3.0_unigene58572 SustainPine v3.0 395
• AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
• FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chromatin remodeling complex subunit 1.487e-15
Internal
sp_v3.0_unigene59230 SustainPine v3.0 207
• AutoFact: DNA ligase n=2 Tax=Selaginella moellendorffii RepID=D8RMH0_SELML 6.0e-12
• FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
• Sma3: DNA ligase 5.95e-14
Internal
sp_v3.0_unigene62061 SustainPine v3.0 240
• AutoFact: DNA ligase 4 n=2 Tax=Arabidopsis RepID=DNLI4_ARATH 3.0e-28
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 5.004e-10
Internal
sp_v3.0_unigene62444 SustainPine v3.0 248
• AutoFact: DNA ligase n=1 Tax=Populus trichocarpa RepID=B9IN68_POPTR 2.0e-08
• FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene64037 SustainPine v3.0 244
• AutoFact: DNA ligase n=2 Tax=Selaginella moellendorffii RepID=D8SJP8_SELML 4.0e-28
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene64579 SustainPine v3.0 177
• AutoFact: Allantoinase, putative n=1 Tax=Ricinus communis RepID=B9RZ78_RICCO 8.0e-11
• FL-Next: tr=Allantoinase, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene64884 SustainPine v3.0 151
• AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 5.0e-11
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 5.912e-07
Internal
sp_v3.0_unigene68860 SustainPine v3.0 241
• AutoFact: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9N9M4_POPTR 4.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain