Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA ligase, ATP-dependent, conserved site

Term: IPR016059  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene35000 SustainPine v3.0 523
AutoFact: Tetratricopeptide repeat-containing protein n=4 Tax=Arabidopsis RepID=F4HS99_ARATH 4.0e-23
FL-Next: tr=Tetratricopeptide repeat-containing protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Sma3: Eukaryotic translation initiation factor 3 subunit, putative 2.82e-07
Internal
sp_v3.0_unigene35015 SustainPine v3.0 746
AutoFact: putative phospholipase [Arabidopsis thaliana] gb|AAC27833.1| putative phospholipase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Monoglyceride lipase, putative 2.463e-22
C-terminus
sp_v3.0_unigene35377 SustainPine v3.0 362
AutoFact: Tetratricopeptide repeat-containing protein n=4 Tax=Arabidopsis RepID=F4HS99_ARATH 1.0e-32
FL-Next: tr=Tetratricopeptide repeat-containing protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Sma3: Eukaryotic translation initiation factor 3 subunit, putative 3.734e-07
Internal
sp_v3.0_unigene35542 SustainPine v3.0 796
AutoFact: Photosystem I reaction center subunit n=1 Tax=Nicotiana tabacum RepID=D2K7Z2_TOBAC 6.02558e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Photosystem I reaction center subunit N, chloroplastic 2.971e-17
Complete
sp_v3.0_unigene35620 SustainPine v3.0 921
AutoFact: Ethylene-responsive transcription factor 1A n=1 Tax=Medicago truncatula RepID=A9P6A4_MEDTR 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 1.4013e-45
Internal
sp_v3.0_unigene36491 SustainPine v3.0 1316
AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L125_MALDO 7.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 2.336e-38
C-terminus
sp_v3.0_unigene37491 SustainPine v3.0 525
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene37531 SustainPine v3.0 771
AutoFact: GCN5-related N-acetyltransferase-like protein [Arabidopsis thaliana] gb|AAD15402.1| putative alanine acetyl transferase [Arabidopsis thaliana] gb|ABD60714.1| At2g32020 [Arabidopsis thaliana] gb|AEC08623.1| GCN5-related N-acetyltransferase-like protein [Ar 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative alanine acetyl transferase 1.616e-08
Complete
sp_v3.0_unigene37738 SustainPine v3.0 1427
AutoFact: Ethylene-responsive transcription factor 1A n=1 Tax=Arabidopsis thaliana RepID=EF100_ARATH 7.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 1.46e-40
C-terminus
sp_v3.0_unigene37862 SustainPine v3.0 1831
AutoFact: Levopimaradiene synthase, chloroplastic n=2 Tax=Pinus RepID=TPSD1_PINTA 0.0
FL-Next: sp=Levopimaradiene synthase, chloroplastic; Pinus taeda (Loblolly pine). 0.0
Sma3: Ent-copalyl diphosphate synthase 1.532e-22
C-terminus
sp_v3.0_unigene38013 SustainPine v3.0 1263
AutoFact: PsbP domain containing protein 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene38938 SustainPine v3.0 545
AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 0.0
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 7.815e-10
Internal
sp_v3.0_unigene39326 SustainPine v3.0 355
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 1.4013e-45
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 8.136e-13
Internal
sp_v3.0_unigene39758 SustainPine v3.0 250
AutoFact: PARP domain containing protein 7.0e-06
FL-Next: sp=Probable inactive poly [ADP-ribose] polymerase SRO2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Poly polymerase catalytic domain containing protein, expressed 2.995e-08
Internal
sp_v3.0_unigene41771 SustainPine v3.0 869
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 0.0
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene44382 SustainPine v3.0 1524
AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA Helicase 4.028e-21
C-terminus
sp_v3.0_unigene45096 SustainPine v3.0 378
AutoFact: ERF protein n=1 Tax=Glycine max RepID=D9IXB2_SOYBN 6.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 2.8026e-45
C-terminus
sp_v3.0_unigene45112 SustainPine v3.0 596
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 0.0
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene45422 SustainPine v3.0 912
AutoFact: Pinene synthase, chloroplastic n=5 Tax=Picea RepID=TPSD2_PICSI 0.0
FL-Next: tr=(-)-alpha/beta-pinene synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copalyl diphosphate synthase 1.055e-15
N-terminus
sp_v3.0_unigene46130 SustainPine v3.0 561
AutoFact: putative transcriptional regulator [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 3.709e-32
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain