Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA ligase, ATP-dependent, conserved site

Term: IPR016059  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3601 SustainPine v3.0 1865
AutoFact: chromatin remodeling 5 [Arabidopsis thaliana] gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 6.666e-34
Putative Complete
sp_v3.0_unigene3706 SustainPine v3.0 1130
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene3794 SustainPine v3.0 2975
AutoFact: human Mi-2 autoantigen-like protein [Arabidopsis thaliana] dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 5.211e-11
Putative Complete
sp_v3.0_unigene3902 SustainPine v3.0 1676
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene4436 SustainPine v3.0 729
AutoFact: AP2 domain containing protein 7.0e-07
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Ethylene-responsive transcription factor 4 8.39e-22
Internal
sp_v3.0_unigene4750 SustainPine v3.0 348
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 3.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene4852 SustainPine v3.0 333
AutoFact: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HGP8_POPTR 8.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 1.44e-39
N-terminus
sp_v3.0_unigene5942 SustainPine v3.0 2589
AutoFact: EREBP-3 homolog n=2 Tax=Stylosanthes hamata RepID=Q9ZR83_STYHA 2.0e-17
FL-Next: sp=Ethylene-responsive transcription factor 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: AP2/ERF domain-containing transcription factor 1.12706e-41
Complete
sp_v3.0_unigene6032 SustainPine v3.0 1374
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Eukaryotic translation initiation factor 3 subunit, putative 1.934e-10
Internal
sp_v3.0_unigene6666 SustainPine v3.0 3232
AutoFact: ISWI chromatin remodeling complex ATPase ISW1, putative n=1 Tax=Ricinus communis RepID=B9S6I7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 super family 1.796e-12
Complete
sp_v3.0_unigene6795 SustainPine v3.0 1479
AutoFact: alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gb|AAL15341.1| At2g47630/F17A22.2 [Arabidopsis thaliana] gb|AAM14848.1| putative phospholipase [Arabidopsis thaliana] gb|AAC63619.2| putative phospholipase [Arabidopsis thaliana] gb|AAM 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Monoglyceride lipase, putative 3.852e-22
Complete
sp_v3.0_unigene6916 SustainPine v3.0 1405
AutoFact: hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] gb|AAK25929.1|AF360219_1 putative lipase [Arabidopsis thaliana] gb|AAK93696.1| putative lipase [Arabidopsis thaliana] gb|AED92248.1| hydrolase, alpha/beta fold family protein [Arabidopsis th 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Monoglyceride lipase, putative 1.559e-22
Complete
sp_v3.0_unigene7002 SustainPine v3.0 2055
AutoFact: Cyclin-L1, putative n=1 Tax=Ricinus communis RepID=B9RTZ2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CycT1 2.18e-18
Putative Complete
sp_v3.0_unigene7461 SustainPine v3.0 2307
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zinc finger protein, putative 7.819e-09
Complete
sp_v3.0_unigene7902 SustainPine v3.0 1076
AutoFact: Tetratricopeptide repeat domain protein n=2 Tax=Arabidopsis RepID=F4JKH6_ARATH 0.0
FL-Next: tr=Eukaryotic translation initiation factor 3 subunit, putative; Ricinus communis (Castor bean). 0.0
Sma3: Eukaryotic translation initiation factor 3 subunit, putative 4.512e-10
Internal
sp_v3.0_unigene8495 SustainPine v3.0 1349
AutoFact: ERF transcription factor n=1 Tax=Solanum tuberosum RepID=A4ZX83_SOLTU 1.0e-27
FL-Next: sp=Ethylene-responsive transcription factor 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: AP2/ERF domain-containing transcription factor 7.191e-38
Complete
sp_v3.0_unigene8702 SustainPine v3.0 2171
AutoFact: Alpha-bisabolene synthase n=1 Tax=Abies grandis RepID=TPSD1_ABIGR 0.0
FL-Next: sp=Alpha-bisabolene synthase; Abies grandis (Grand fir). 0.0
Sma3: Copalyl diphosphate synthase 8.514e-26
C-terminus
sp_v3.0_unigene9566 SustainPine v3.0 636
AutoFact: DNA ligase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQI2_VITVI 0.0
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 6.943e-10
Internal
sp_v3.0_unigene9633 SustainPine v3.0 2739
AutoFact: Isopimaradiene synthase, chloroplastic n=6 Tax=Picea RepID=TPSD2_PICAB 0.0
FL-Next: sp=Levopimaradiene synthase, chloroplastic; Pinus taeda (Loblolly pine). 0.0
Sma3: Copalyl diphosphate synthase 3.723e-33
Complete
sp_v3.0_unigene9731 SustainPine v3.0 612
AutoFact: pfam12807, eIF3_p135, Translation initiation factor eIF3 subunit 135 6.0e-34
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Eukaryotic translation initiation factor 3 subunit, putative 1.816e-10
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain