Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-directed RNA polymerase activity

Term: GO:0003968  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene78646 SustainPine v3.0 213
AutoFact: RNA-dependent RNA polymerase 6 n=2 Tax=Arabidopsis RepID=RDR6_ARATH 4.0e-19
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Rna-dependent RNA polymerase 1.592e-08
Internal
sp_v3.0_unigene79309 SustainPine v3.0 234
AutoFact: putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] 1.0e-17
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Rna-dependent RNA polymerase 1.948e-08
Internal
sp_v3.0_unigene93923 SustainPine v3.0 1548
AutoFact: RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Rna-dependent RNA polymerase 9.39e-24
C-terminus
sp_v3.0_unigene93988 SustainPine v3.0 403
AutoFact: RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY 3.0e-39
FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Rna-dependent RNA polymerase 2.608e-23
Internal
sp_v3.0_unigene96426 SustainPine v3.0 523
AutoFact: RNA-directed RNA polymerase n=6 Tax=Solanum RepID=Q9ZR58_SOLLC 4.0e-35
FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA-directed RNA polymerase, putative 1.437e-17
Internal
sp_v3.0_unigene98279 SustainPine v3.0 403
AutoFact: RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RB56_RICCO 6.0e-19
FL-Next: sp=RNA-dependent RNA polymerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene102123 SustainPine v3.0 1070
AutoFact: RNA-dependent RNA polymerase 6 n=2 Tax=Arabidopsis RepID=RDR6_ARATH 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Rna-dependent RNA polymerase 2.011e-08
C-terminus
sp_v3.0_unigene106801 SustainPine v3.0 328
AutoFact: RNA-directed RNA polymerase [Petunia x hybrida] 5.0e-32
FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Rna-dependent RNA polymerase 1.769e-23
Internal
sp_v3.0_unigene108367 SustainPine v3.0 189
AutoFact: RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI 3.0e-12
FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene111538 SustainPine v3.0 266
AutoFact: RNA-directed RNA polymerase n=6 Tax=Solanum RepID=Q9ZR58_SOLLC 6.0e-25
FL-Next: sp=RNA-dependent RNA polymerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA-directed RNA polymerase, putative 2.497e-16
Internal
sp_v3.0_unigene129950 SustainPine v3.0 438
AutoFact: RNA-directed RNA polymerase-like, putative n=3 Tax=Solanum demissum RepID=Q6L447_SOLDE 4.0e-29
FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA-directed RNA polymerase, putative 6.964e-18
Internal
sp_v3.0_unigene145039 SustainPine v3.0 297
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus thunbergii RepID=Q9ZRK1_PINTH 1.0e-17
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Reverse transcriptase 0.0
Internal
sp_v3.0_unigene148529 SustainPine v3.0 248
AutoFact: RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata RepID=Q75ZN6_VIGUN 3.0e-16
FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene149296 SustainPine v3.0 190
AutoFact: RNA-dependent RNA polymerase 6 n=6 Tax=Nicotiana RepID=A9CRC9_TOBAC 3.0e-14
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Rna-dependent RNA polymerase 3.009e-08
Internal
sp_v3.0_unigene165407 SustainPine v3.0 426
AutoFact: Probable RNA-dependent RNA polymerase 4 n=2 Tax=Oryza sativa Japonica Group RepID=RDR4_ORYSJ 1.0e-39
FL-Next: sp=Probable RNA-dependent RNA polymerase 4; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Putative uncharacterized protein At2g19930 1.082e-09
Internal
sp_v3.0_unigene167117 SustainPine v3.0 290
AutoFact: RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY 5.0e-26
FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA-directed RNA polymerase, putative 6.56e-17
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain