Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleolus

Term: GO:0005730  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene2674 SustainPine v3.0 1064
• AutoFact: Histone H2B n=2 Tax=Picea sitchensis RepID=A9NZJ5_PICSI 5.00264e-43
• FL-Next: sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2B 1.098e-33
Putative Complete
sp_v3.0_unigene2763 SustainPine v3.0 2135
• AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 5.401e-22
C-terminus
sp_v3.0_unigene2802 SustainPine v3.0 1791
• AutoFact: ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor, putative 1.89e-13
Complete
sp_v3.0_unigene2826 SustainPine v3.0 2704
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 53; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 7 1.011e-10
Complete
sp_v3.0_unigene2842 SustainPine v3.0 980
• AutoFact: 60S ribosomal protein L34, putative [Solanum demissum] 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L34 1.848e-10
N-terminus
sp_v3.0_unigene2865 SustainPine v3.0 1385
• AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 2.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene2903 SustainPine v3.0 1761
• AutoFact: pescadillo-like protein [Zinnia violacea] 0.0
• FL-Next: sp=Pescadillo homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
• Sma3: Pescadillo-like protein 4.689e-14
Putative C-terminus
sp_v3.0_unigene2912 SustainPine v3.0 1919
• AutoFact: transcription factor (E2F) [Chenopodium rubrum] 0.0
• FL-Next: tr=E2F-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Transcription factor E2F 1.01e-20
C-terminus
sp_v3.0_unigene2914 SustainPine v3.0 1703
• AutoFact: end binding protein 1C [Arabidopsis thaliana] dbj|BAB09646.1| unnamed protein product [Arabidopsis thaliana] gb|AAM65311.1| microtubule-associated protein EB1-like protein [Arabidopsis thaliana] dbj|BAD43258.1| unknown protein [Arabidopsis thaliana] gb|AB 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Microtubule-associated protein EB1-like protein 6.349e-09
Complete
sp_v3.0_unigene3015 SustainPine v3.0 1411
• AutoFact: [O] COG5272 Ubiquitin 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Bi-ubiquitin 1.79e-08
Complete
sp_v3.0_unigene3186 SustainPine v3.0 1077
• AutoFact: Os07g0673500 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q0D3Q1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor, putative 1.249e-13
N-terminus
sp_v3.0_unigene3259 SustainPine v3.0 1762
• AutoFact: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SWQ3_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Phototropin 2.094e-39
C-terminus
sp_v3.0_unigene3266 SustainPine v3.0 3195
• AutoFact: [R] COG2940 Proteins containing SET domain 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Set domain protein, putative 4.398e-14
Complete
sp_v3.0_unigene3274 SustainPine v3.0 640
• AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 6.23199e-41
N-terminus
sp_v3.0_unigene3278 SustainPine v3.0 2534
• AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA binding protein, putative 4.985e-19
Complete
sp_v3.0_unigene3306 SustainPine v3.0 2469
• AutoFact: putative RNA helicase [Oryza sativa Japonica Group] dbj|BAD35820.1| putative RNA helicase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
• Sma3: ATP-dependent RNA helicase, putative 7.491e-19
Complete
sp_v3.0_unigene3335 SustainPine v3.0 1709
• AutoFact: DNA helicase, TBP-interacting protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TL22_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA helicase, TBP-interacting protein 5.005e-12
Complete
sp_v3.0_unigene3379 SustainPine v3.0 2204
• AutoFact: Mitochondrial processing peptidase beta subunit n=1 Tax=Cucumis melo RepID=Q9AXQ2_CUCME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Mitochondrial processing peptidase 6.725e-12
Complete
sp_v3.0_unigene3424 SustainPine v3.0 2988
• AutoFact: RecName: Full=Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a; Includes: RecName: Full=Enoyl-CoA hydratase/3-2-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; Includes: RecName: Full=3-hydroxyacyl-CoA dehydrogenase emb|CAA556 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peroxisomal fatty acid beta-oxidation multifunctional protein 1.127e-11
Complete
sp_v3.0_unigene3459 SustainPine v3.0 1085
• AutoFact: partner of Y14-mago [Arabidopsis thaliana] ref|NP_849639.1| partner of Y14-mago [Arabidopsis thaliana] ref|NP_001031023.1| partner of Y14-mago [Arabidopsis thaliana] gb|AAF16626.1|AC011661_4 T23J18.7 [Arabidopsis thaliana] gb|AAO42233.1| unknown protein [ 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain