Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleolus

Term: GO:0005730  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene207873 SustainPine v3.0 429
• AutoFact: Histone H4 n=1 Tax=Ostreococcus tauri RepID=Q01FF9_OSTTA 9.0e-26
• FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Histone H4 1.194e-11
Complete
sp_v3.0_unigene207892 SustainPine v3.0 397
• AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 3.0e-15
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene207946 SustainPine v3.0 331
• AutoFact: Vesicular-fusion protein nsf, putative n=1 Tax=Ricinus communis RepID=B9RZA0_RICCO 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: N-ethylmaleimide sensitive fusion protein 1.802e-11
Internal
sp_v3.0_unigene207976 SustainPine v3.0 301
• AutoFact: Nucleolar RNA-binding Nop10p-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6K950_ORYSJ 6.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 3-like protein 7.315e-09
Complete
sp_v3.0_unigene208055 SustainPine v3.0 218
• AutoFact: 40S ribosomal protein S3a n=8 Tax=fabids RepID=RS3A_CICAR 7.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 6.1e-21
C-terminus
sp_v3.0_unigene208058 SustainPine v3.0 215
• AutoFact: 40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI 4.0e-24
• FL-Next: sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S8 0.0
N-terminus
sp_v3.0_unigene208062 SustainPine v3.0 210
• AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 9.0e-07
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene208095 SustainPine v3.0 180
• AutoFact: RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07 dbj|BAA89498.1| cyc07 [Daucus carota] 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3a 3.897e-25
Internal
sp_v3.0_unigene208166 SustainPine v3.0 123
• AutoFact: ORF MSV144 putative ubiquitin, similar to Neurospora crassa GB:U01220 n=1 Tax=Melanoplus sanguinipes entomopoxvirus RepID=Q9YVU8_MSEPV 1.0e-11
• FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Internal
sp_v3.0_unigene208391 SustainPine v3.0 417
• AutoFact: small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] ref|NP_001189837.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] gb|AAF13077.1|AC009176_4 putative small nuclear ribonucleoprotein (Sm-D1) [Arabidopsis thaliana] gb|AAL47458.1| AT3g075 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene208429 SustainPine v3.0 691
• AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2B 7.795e-33
Putative Complete
sp_v3.0_unigene208466 SustainPine v3.0 431
• AutoFact: 40S ribosomal protein S4-1 [Arabidopsis thaliana] sp|Q93VH9.1|RS41_ARATH RecName: Full=40S ribosomal protein S4-1 gb|AAK43846.1|AF370469_1 Unknown protein [Arabidopsis thaliana] gb|AAK59636.1| putative ribosomal protein S4 [Arabidopsis thaliana] gb|AAL341 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.456e-24
N-terminus
sp_v3.0_unigene208468 SustainPine v3.0 627
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 9.99967e-42
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene208474 SustainPine v3.0 902
• AutoFact: 40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI 0.0
• FL-Next: sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S8 0.0
Complete
sp_v3.0_unigene208487 SustainPine v3.0 816
• AutoFact: Ubiquitin [Medicago truncatula] 0.0
• FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Bi-ubiquitin 1.764e-08
Complete
sp_v3.0_unigene208489 SustainPine v3.0 1000
• AutoFact: Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Bi-ubiquitin 1.725e-08
Putative Complete
sp_v3.0_unigene208499 SustainPine v3.0 281
• AutoFact: Elongation factor 1-alpha n=1 Tax=Capsicum annuum RepID=Q9M516_CAPAN 6.0e-28
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 7.357e-39
Internal
sp_v3.0_unigene208500 SustainPine v3.0 629
• AutoFact: polyubiquitin [Pinus sylvestris] 0.0
• FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
• Sma3: Bi-ubiquitin 1.751e-08
Putative Complete
sp_v3.0_unigene208501 SustainPine v3.0 659
• AutoFact: Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH 0.0
• FL-Next: tr=Hexameric polyubiquitin 6PU11; Capsicum annuum (Bell pepper). 0.0
• Sma3: Polyubiquitin 1.014e-07
Complete
sp_v3.0_unigene208511 SustainPine v3.0 471
• AutoFact: RuBisCO subunit binding-protein beta subunit precursor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RuBisCO large subunit-binding protein subunit beta, chloroplastic 2.34e-10
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain