Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleolus

Term: GO:0005730  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene206562 SustainPine v3.0 732
• AutoFact: 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_192718.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_564434.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|XP_002872461.1| hypothetical protein ARALYDRAFT_489832 [Arabidopsis ly 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 8.581e-12
Complete
sp_v3.0_unigene206650 SustainPine v3.0 432
• AutoFact: chaperone DNA J2 [Zea mays] gb|AAC08009.1| DnaJ-related protein ZMDJ1 [Zea mays] gb|ACF78499.1| unknown [Zea mays] gb|ACG32917.1| dnaJ protein [Zea mays] gb|ACL53813.1| unknown [Zea mays] gb|ACN34490.1| unknown [Zea mays] gb|ACR38444.1| unknown [Zea mays] 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DnaJ protein 3.583e-14
C-terminus
sp_v3.0_unigene206675 SustainPine v3.0 284
• AutoFact: 60S ribosomal protein L13a n=3 Tax=Picea RepID=RL13A_PICMA 5.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L13a 4.788e-21
N-terminus
sp_v3.0_unigene206686 SustainPine v3.0 423
• AutoFact: Ribosomal protein L21 n=8 Tax=Endopterygota RepID=D1LYQ2_MANSE 2.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L21 2.365e-10
C-terminus
sp_v3.0_unigene206729 SustainPine v3.0 559
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.54143e-44
Complete
sp_v3.0_unigene206833 SustainPine v3.0 365
• AutoFact: MAR-binding protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBR1_CUCME 6.0e-22
• FL-Next: sp=Probable nucleolar protein 5-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene206852 SustainPine v3.0 942
• AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 7.00005e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2B 5.615e-36
Putative Complete
sp_v3.0_unigene206882 SustainPine v3.0 484
• AutoFact: large subunit ribosomal protein L24e [Arabidopsis thaliana] ref|NP_001078059.1| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp|O22165.1|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb|AAC31838.1| 60S ribosomal prote 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene206927 SustainPine v3.0 450
• AutoFact: PREDICTED: similar to ribosomal protein L9 [Strongylocentrotus purpuratus] ref|XP_001179587.1| PREDICTED: similar to ribosomal protein L9 [Strongylocentrotus purpuratus] 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L9 5.046e-22
C-terminus
sp_v3.0_unigene206930 SustainPine v3.0 386
• AutoFact: PREDICTED: similar to ribosomal protein L9 [Strongylocentrotus purpuratus] ref|XP_001179587.1| PREDICTED: similar to ribosomal protein L9 [Strongylocentrotus purpuratus] 4.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L9 5.046e-22
C-terminus
sp_v3.0_unigene207021 SustainPine v3.0 544
• AutoFact: 40S ribosomal protein S23 n=32 Tax=leotiomyceta RepID=RS23_ASPFU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
Complete
sp_v3.0_unigene207287 SustainPine v3.0 656
• AutoFact: 60S ribosomal protein L12 n=3 Tax=Hypocreales RepID=E9EUF4_METAR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L12 7.917e-19
Complete
sp_v3.0_unigene207352 SustainPine v3.0 288
• AutoFact: 60S ribosomal protein L30-like protein n=6 Tax=Oryza sativa RepID=Q5QMX1_ORYSJ 6.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene207689 SustainPine v3.0 1139
• AutoFact: molecular chaperone Hsp90-1 [Solanum lycopersicum] 0.0
• FL-Next: tr=GRP94; Pinus taeda (Loblolly pine). 0.0
• Sma3: Heat shock protein 90 8.342e-33
Internal
sp_v3.0_unigene207711 SustainPine v3.0 793
• AutoFact: Histone H1-like protein (Fragment) n=15 Tax=Picea sitchensis RepID=E0ZG68_PICSI 6.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H1 0.0
Putative Complete
sp_v3.0_unigene207722 SustainPine v3.0 709
• AutoFact: Histone H2A n=1 Tax=Populus trichocarpa RepID=B9I7E7_POPTR 8.0e-25
• FL-Next: sp=Histone H2A; Pinus taeda (Loblolly pine). 0.0
• Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene207731 SustainPine v3.0 689
• AutoFact: Histone H2A.6 n=6 Tax=Spermatophyta RepID=H2A6_ARATH 2.0e-25
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene207752 SustainPine v3.0 617
• AutoFact: 26S protease regulatory subunit 7 homolog A n=26 Tax=Embryophyta RepID=PRS7A_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasomal ATPase 3.843e-14
C-terminus
sp_v3.0_unigene207801 SustainPine v3.0 519
• AutoFact: 60S ribosomal protein L27a-3 [Arabidopsis thaliana] ref|XP_002888788.1| 60S ribosomal protein L27A [Arabidopsis lyrata subsp. lyrata] sp|P49637.2|R27A3_ARATH RecName: Full=60S ribosomal protein L27a-3 gb|AAG52338.1|AC011663_17 60S ribosomal protein L27A; 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L27a 2.684e-20
Complete
sp_v3.0_unigene207821 SustainPine v3.0 480
• AutoFact: Os03g0374575 protein n=4 Tax=Oryza sativa RepID=C7J0R1_ORYSJ 6.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/arginine rich splicing factor, putative 3.74e-08
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain