Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleolus

Term: GO:0005730  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene16051 SustainPine v3.0 3042
• AutoFact: [O] COG0464 ATPases of the AAA+ class 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division cycle protein 48 7.867e-13
Complete
sp_v3.0_unigene16186 SustainPine v3.0 315
• AutoFact: 60S ribosomal protein L23 [Phytophthora infestans T30-4] gb|AAY43411.1| ribosomal protein L23 [Phytophthora infestans] gb|EEY61615.1| 60S ribosomal protein L23 [Phytophthora infestans T30-4] 6.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23 9.883e-11
N-terminus
sp_v3.0_unigene16224 SustainPine v3.0 843
• AutoFact: 40S ribosomal protein S24 n=1 Tax=Glycine max RepID=C6THP2_SOYBN 5.0e-10
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Putative Complete
sp_v3.0_unigene16347 SustainPine v3.0 516
• AutoFact: Elongation factor 1-alpha n=178 Tax=Eukaryota RepID=EF1A_PIRIN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
C-terminus
sp_v3.0_unigene16389 SustainPine v3.0 351
• AutoFact: 60S ribosomal protein L21 n=2 Tax=Postia placenta Mad-698-R RepID=B8P5U9_POSPM 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L21 4.034e-10
N-terminus
sp_v3.0_unigene16572 SustainPine v3.0 529
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 1.0e-26
• FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene16621 SustainPine v3.0 1602
• AutoFact: Rac-like GTP-binding protein 3 n=4 Tax=BEP clade RepID=RAC3_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative rac protein 2.804e-17
Complete
sp_v3.0_unigene16765 SustainPine v3.0 893
• AutoFact: histone H4 [Hyacinthus orientalis] 5.0e-38
• FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H4 1.194e-11
Complete
sp_v3.0_unigene16783 SustainPine v3.0 1014
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene16898 SustainPine v3.0 1445
• AutoFact: Transcription factor AP2-EREBP n=1 Tax=Lotus japonicus RepID=B3IX32_LOTJA 6.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 2.88667e-43
Complete
sp_v3.0_unigene17026 SustainPine v3.0 1834
• AutoFact: polyubiquitin [Zea mays] gb|AAB21994.1| polyubiquitin [Zea mays] gb|AAQ07454.1| ubiquitin [Musa acuminata] dbj|BAD45891.1| polyubiquitin [Oryza sativa Japonica Group] gb|EEC81187.1| hypothetical protein OsI_24193 [Oryza sativa Indica Group] gb|EEE66229.1| 0.0
• FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
• Sma3: Bi-ubiquitin 1.624e-08
Putative Complete
sp_v3.0_unigene17038 SustainPine v3.0 2109
• AutoFact: molecular chaperone Hsp90-2 [Nicotiana benthamiana] 0.0
• FL-Next: tr=GRP94; Pinus taeda (Loblolly pine). 0.0
• Sma3: Heat shock protein 90 3.275e-30
Putative C-terminus
sp_v3.0_unigene17095 SustainPine v3.0 2067
• AutoFact: ubiquitin [Solanum lycopersicum] 0.0
• FL-Next: sp=Polyubiquitin; Aglaothamnion neglectum (Red alga). 0.0
• Sma3: Bi-ubiquitin 1.712e-08
Complete
sp_v3.0_unigene17107 SustainPine v3.0 1028
• AutoFact: Histone H2B.3 n=41 Tax=Spermatophyta RepID=H2B3_ARATH 9.00054e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2B 1.22e-33
Complete
sp_v3.0_unigene17194 SustainPine v3.0 1761
• AutoFact: Heat shock protein 70 n=3 Tax=Embryophyta RepID=C9WCK6_9MARC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat shock protein 70 2.486e-35
C-terminus
sp_v3.0_unigene17196 SustainPine v3.0 1482
• AutoFact: 60S ribosomal protein L7a n=11 Tax=Poaceae RepID=RL7A_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7a, putative 1.538e-08
Complete
sp_v3.0_unigene17215 SustainPine v3.0 1581
• AutoFact: 40S ribosomal protein S2, putative n=2 Tax=Ricinus communis RepID=B9RIB2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S2 2.815e-19
Complete
sp_v3.0_unigene17260 SustainPine v3.0 2334
• AutoFact: molecular chaperone Hsp90-2 [Nicotiana benthamiana] 0.0
• FL-Next: sp=Heat shock protein 90-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Heat shock protein 90 9.80909e-45
Complete
sp_v3.0_unigene17293 SustainPine v3.0 1607
• AutoFact: [O] COG5272 Ubiquitin 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Bi-ubiquitin 1.674e-08
Complete
sp_v3.0_unigene17337 SustainPine v3.0 1717
• AutoFact: 3-ketoacyl-CoA thiolase 2 [Arabidopsis thaliana] sp|Q56WD9.2|THIK2_ARATH RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal; AltName: Full=Acetyl-CoA acyltransferase 2; AltName: Full=Beta-ketothiolase 2; AltName: Full=Peroxisomal 3-oxoacyl-CoA thiolase 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 3-ketoacyl-CoA thiolase 6.73e-16
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain