Sequence
|
Assembly
|
Length (nt)
|
|
Full-Length
|
sp_v3.0_unigene58947
|
SustainPine v3.0
|
198
|
• AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE
|
2.0e-14
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
0.0
|
|
Internal
|
sp_v3.0_unigene58987
|
SustainPine v3.0
|
488
|
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ
|
2.0e-35
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
6.331e-17
|
|
Internal
|
sp_v3.0_unigene60062
|
SustainPine v3.0
|
279
|
• AutoFact: Type 2 1-hydroxy-2-methyl-2-(E)-butenyl-4-phosphate reductase n=3 Tax=Pinaceae RepID=A9P332_PINTA
|
3.0e-28
|
• FL-Next: tr=Putative 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase type 2; Pinus densiflora (Japanese red pine).
|
0.0
|
• Sma3: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
|
6.977e-12
|
|
Internal
|
sp_v3.0_unigene60492
|
SustainPine v3.0
|
320
|
• AutoFact: Gag/pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9C5V1_ARATH
|
1.0e-24
|
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).
|
0.0
|
• Sma3: Putative polyprotein
|
4.435e-11
|
|
Internal
|
sp_v3.0_unigene60972
|
SustainPine v3.0
|
200
|
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q4JQ45_CYCRE
|
1.0e-16
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
4.412e-20
|
|
Internal
|
sp_v3.0_unigene61914
|
SustainPine v3.0
|
292
|
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q4JQ43_GINBI
|
7.0e-31
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
3.596e-32
|
|
Internal
|
sp_v3.0_unigene62049
|
SustainPine v3.0
|
245
|
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6I578_ORYSJ
|
2.0e-19
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
0.0
|
|
Internal
|
sp_v3.0_unigene62187
|
SustainPine v3.0
|
289
|
• AutoFact: Unassigned protein
|
|
• FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).
|
0.0
|
• Sma3: Putative polyprotein
|
9.72e-09
|
|
Internal
|
sp_v3.0_unigene63451
|
SustainPine v3.0
|
279
|
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB
|
8.0e-30
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
0.0
|
|
Internal
|
sp_v3.0_unigene64021
|
SustainPine v3.0
|
341
|
• AutoFact: Gag/pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9C5V1_ARATH
|
2.0e-31
|
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).
|
0.0
|
• Sma3: Retrotransposon protein, putative, unclassified
|
2.812e-17
|
|
Putative C-terminus
|
sp_v3.0_unigene64732
|
SustainPine v3.0
|
185
|
• AutoFact: Putative copia-like retrotransposon Hopscotch polyprotein n=2 Tax=Zea mays RepID=Q8W0X9_MAIZE
|
2.0e-11
|
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
1.54e-32
|
|
Internal
|
sp_v3.0_unigene67296
|
SustainPine v3.0
|
291
|
• AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN
|
7.0e-26
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
0.0
|
|
Putative N-terminus
|
sp_v3.0_unigene68040
|
SustainPine v3.0
|
365
|
• AutoFact: Integrase n=1 Tax=Cucumis melo subsp. melo RepID=A6YTD9_CUCME
|
1.0e-26
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
7.144e-07
|
|
Internal
|
sp_v3.0_unigene68079
|
SustainPine v3.0
|
353
|
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL
|
6.0e-38
|
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
5.412e-39
|
|
Internal
|
sp_v3.0_unigene71268
|
SustainPine v3.0
|
324
|
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB
|
9.0e-29
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
4.454e-27
|
|
Internal
|
sp_v3.0_unigene71596
|
SustainPine v3.0
|
356
|
• AutoFact: Putative retroelement n=2 Tax=Oryza sativa RepID=Q8H8K3_ORYSJ
|
4.0e-39
|
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).
|
0.0
|
• Sma3: Retrotransposon protein, putative, unclassified
|
1.487e-38
|
|
C-terminus
|
sp_v3.0_unigene75539
|
SustainPine v3.0
|
146
|
• AutoFact: OSJNBb0051N19.3 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XSG0_ORYSJ
|
9.0e-13
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
1.956e-29
|
|
Internal
|
sp_v3.0_unigene76191
|
SustainPine v3.0
|
365
|
• AutoFact: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR
|
3.0e-29
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, unclassified
|
2.149e-32
|
|
N-terminus
|
sp_v3.0_unigene99345
|
SustainPine v3.0
|
492
|
• AutoFact: Gag and Pol n=1 Tax=Zea mays RepID=Q8LSK0_MAIZE
|
0.0
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
0.0
|
|
N-terminus
|
sp_v3.0_unigene105051
|
SustainPine v3.0
|
458
|
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=6 Tax=Oryza sativa Japonica Group RepID=Q10JJ3_ORYSJ
|
1.0e-37
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass
|
0.0
|
|
N-terminus
|