Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Domain of unknown function DUF1263

Term: IPR010685  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene58947 SustainPine v3.0 198
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal
sp_v3.0_unigene58987 SustainPine v3.0 488
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 6.331e-17
Internal
sp_v3.0_unigene60062 SustainPine v3.0 279
AutoFact: Type 2 1-hydroxy-2-methyl-2-(E)-butenyl-4-phosphate reductase n=3 Tax=Pinaceae RepID=A9P332_PINTA 3.0e-28
FL-Next: tr=Putative 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase type 2; Pinus densiflora (Japanese red pine). 0.0
Sma3: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 6.977e-12
Internal
sp_v3.0_unigene60492 SustainPine v3.0 320
AutoFact: Gag/pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9C5V1_ARATH 1.0e-24
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Putative polyprotein 4.435e-11
Internal
sp_v3.0_unigene60972 SustainPine v3.0 200
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q4JQ45_CYCRE 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.412e-20
Internal
sp_v3.0_unigene61914 SustainPine v3.0 292
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q4JQ43_GINBI 7.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.596e-32
Internal
sp_v3.0_unigene62049 SustainPine v3.0 245
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6I578_ORYSJ 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal
sp_v3.0_unigene62187 SustainPine v3.0 289
AutoFact: Unassigned protein
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Putative polyprotein 9.72e-09
Internal
sp_v3.0_unigene63451 SustainPine v3.0 279
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 8.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal
sp_v3.0_unigene64021 SustainPine v3.0 341
AutoFact: Gag/pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9C5V1_ARATH 2.0e-31
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 2.812e-17
Putative C-terminus
sp_v3.0_unigene64732 SustainPine v3.0 185
AutoFact: Putative copia-like retrotransposon Hopscotch polyprotein n=2 Tax=Zea mays RepID=Q8W0X9_MAIZE 2.0e-11
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.54e-32
Internal
sp_v3.0_unigene67296 SustainPine v3.0 291
AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Putative N-terminus
sp_v3.0_unigene68040 SustainPine v3.0 365
AutoFact: Integrase n=1 Tax=Cucumis melo subsp. melo RepID=A6YTD9_CUCME 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.144e-07
Internal
sp_v3.0_unigene68079 SustainPine v3.0 353
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 6.0e-38
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 5.412e-39
Internal
sp_v3.0_unigene71268 SustainPine v3.0 324
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 9.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.454e-27
Internal
sp_v3.0_unigene71596 SustainPine v3.0 356
AutoFact: Putative retroelement n=2 Tax=Oryza sativa RepID=Q8H8K3_ORYSJ 4.0e-39
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.487e-38
C-terminus
sp_v3.0_unigene75539 SustainPine v3.0 146
AutoFact: OSJNBb0051N19.3 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XSG0_ORYSJ 9.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.956e-29
Internal
sp_v3.0_unigene76191 SustainPine v3.0 365
AutoFact: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR 3.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 2.149e-32
N-terminus
sp_v3.0_unigene99345 SustainPine v3.0 492
AutoFact: Gag and Pol n=1 Tax=Zea mays RepID=Q8LSK0_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
N-terminus
sp_v3.0_unigene105051 SustainPine v3.0 458
AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=6 Tax=Oryza sativa Japonica Group RepID=Q10JJ3_ORYSJ 1.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain