Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: seed germination

Term: GO:0009845  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene17666 SustainPine v3.0 880
AutoFact: Drf_FH1 multi-domain protein 9.0e-21
Sma3: Extensin 2.055e-36
coding
sp_v3.0_unigene18319 SustainPine v3.0 2836
AutoFact: NAC domain containing protein 28 [Arabidopsis thaliana] gb|AAF06052.1|AC009513_8 Contains similarity to gb|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb|AEE34440.1| NAC domain containing protein 28 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 0.0
Complete
sp_v3.0_unigene18825 SustainPine v3.0 3917
AutoFact: AP2 domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HHX9_POPTR 0.0
FL-Next: tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: AP2 domain-containing transcription factor 0.0
Complete
sp_v3.0_unigene19453 SustainPine v3.0 651
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative receptor-type protein kinase LRK1 2.051e-26
Internal
sp_v3.0_unigene19627 SustainPine v3.0 2773
AutoFact: Phospholipase D n=2 Tax=Vitis vinifera RepID=Q09VU3_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phospholipase D 4.365e-33
Complete
sp_v3.0_unigene19746 SustainPine v3.0 1127
AutoFact: Phospholipase D n=5 Tax=Gossypium RepID=B5B3R1_GOSAR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phospholipase D 3.54e-33
C-terminus
sp_v3.0_unigene20072 SustainPine v3.0 2881
AutoFact: Zn finger protein [Nicotiana tabacum] 2.0e-33
FL-Next: tr=Dof transcription factor; Pinus pinaster (Maritime pine). 0.0
Sma3: F-box family protein 4.2039e-45
Putative Complete
sp_v3.0_unigene20212 SustainPine v3.0 1094
AutoFact: Phospholipase D n=1 Tax=Medicago truncatula RepID=Q2HUA3_MEDTR 0.0
FL-Next: sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phospholipase D 3.511e-33
C-terminus
sp_v3.0_unigene20557 SustainPine v3.0 343
AutoFact: Phospholipase D alpha 1 n=3 Tax=Euphorbiaceae RepID=PLDA1_RICCO 9.0e-16
FL-Next: sp=Phospholipase D alpha 1; Ricinus communis (Castor bean). 0.0
Sma3: Phospholipase D alpha 1.913e-13
Internal
sp_v3.0_unigene20772 SustainPine v3.0 4236
AutoFact: Phospholipase d beta, putative n=1 Tax=Ricinus communis RepID=B9RDI4_RICCO 0.0
FL-Next: sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phospholipase D 3.198e-33
Complete
sp_v3.0_unigene21141 SustainPine v3.0 1075
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 2.0e-22
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene21288 SustainPine v3.0 822
AutoFact: DUF1421 multi-domain protein 2.0e-20
Sma3: Extensin 3.273e-30
coding
sp_v3.0_unigene21347 SustainPine v3.0 1465
AutoFact: DUF1421 multi-domain protein 5.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Extensin 3.432e-30
Complete
sp_v3.0_unigene21502 SustainPine v3.0 792
AutoFact: proteophosphoglycan ppg4 [Leishmania braziliensis MHOM/BR/75/M2904] emb|CAM43270.1| proteophosphoglycan ppg4 [Leishmania braziliensis MHOM/BR/75/M2904] 2.0e-09
FL-Next: sp=Putative membrane protein ycf1; Cucumis sativus (Cucumber). Plastid; Chloroplast. 0.0
Sma3: Extensin 2.226e-24
Internal
sp_v3.0_unigene21865 SustainPine v3.0 552
AutoFact: RNA-binding protein precursor [Nicotiana tabacum] 2.0e-15
FL-Next: tr=Glycine-rich RNA-binding protein; Sequoia sempervirens (California redwood) (Taxodium sempervirens). 0.0
Sma3: RNA-binding protein 3.116e-06
N-terminus
sp_v3.0_unigene21885 SustainPine v3.0 303
AutoFact: putative receptor-like protein kinase [Oryza sativa Japonica Group] gb|ABF99613.1| Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group] gb|EAZ29106.1| hypothetical protein OsJ_13163 [Oryza sativa Japonica Group] 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative receptor-type protein kinase LRK1 1.655e-26
Internal
sp_v3.0_unigene22951 SustainPine v3.0 1381
AutoFact: two pore calcium channel protein 1 [Arabidopsis thaliana] sp|Q94KI8.1|TPC1_ARATH RecName: Full=Two pore calcium channel protein 1; AltName: Full=Calcium channel protein 1; Short=AtCCH1; AltName: Full=Fatty acid oxygenation up-regulated protein 2; AltName: 0.0
FL-Next: sp=Two pore calcium channel protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative two pore calcium channel 1.129e-16
N-terminus
sp_v3.0_unigene24891 SustainPine v3.0 423
AutoFact: Putative glycine-rich RNA-binding protein 2 n=1 Tax=Bambusa oldhamii RepID=B5KLZ7_BAMOL 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 7.67e-26
N-terminus
sp_v3.0_unigene25442 SustainPine v3.0 841
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 1.99993e-41
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene26631 SustainPine v3.0 764
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SMM3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinase, putative 5.291e-33
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain