Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: BRCT domain

Term: IPR001357  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene95100 SustainPine v3.0 378
AutoFact: replication factor C1 [Arabidopsis thaliana] emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] 5.0e-27
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene95908 SustainPine v3.0 926
AutoFact: putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 7.015e-22
C-terminus
sp_v3.0_unigene96237 SustainPine v3.0 654
AutoFact: Putative polyprotein n=1 Tax=Solanum lycopersicum RepID=Q5GA69_SOLLC 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 5.953e-18
Internal
sp_v3.0_unigene96478 SustainPine v3.0 853
AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE9_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.288e-09
Internal
sp_v3.0_unigene96967 SustainPine v3.0 457
AutoFact: putative poly (ADP-ribose) polymerase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly[ADP-ribose] synthetase 1 5.889e-13
N-terminus
sp_v3.0_unigene97136 SustainPine v3.0 216
AutoFact: PHD domain containing protein 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene97395 SustainPine v3.0 731
AutoFact: LIM domain protein WLIM-1 [Helianthus annuus] 5.99994e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pollen-specific protein SF3, putative 2.757e-22
Complete
sp_v3.0_unigene97743 SustainPine v3.0 362
AutoFact: CTR1-like protein kinase [Rosa hybrid cultivar] 4.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Map3k delta-1 protein kinase, putative 1.49e-23
Internal
sp_v3.0_unigene98685 SustainPine v3.0 454
AutoFact: Integrase n=1 Tax=Boechera divaricarpa RepID=B6REL8_9BRAS 8.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.741e-24
Internal
sp_v3.0_unigene99172 SustainPine v3.0 395
AutoFact: N-acetyltransferase n=2 Tax=Arabidopsis thaliana RepID=B3H6L5_ARATH 7.0e-19
FL-Next: tr=N-acetyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative uncharacterized protein At2g41450.2 9.26e-06
Internal
sp_v3.0_unigene99345 SustainPine v3.0 492
AutoFact: Gag and Pol n=1 Tax=Zea mays RepID=Q8LSK0_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
N-terminus
sp_v3.0_unigene100927 SustainPine v3.0 938
AutoFact: putative DNA repair protein XRCC1 [Arabidopsis thaliana] emb|CAC16136.1| putative DNA repair protein XRCC1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: Putative DNA repair protein 5.848e-06
Putative C-terminus
sp_v3.0_unigene101075 SustainPine v3.0 521
AutoFact: rve domain containing protein 8.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.65e-23
Internal
sp_v3.0_unigene101565 SustainPine v3.0 771
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 2.978e-11
Putative C-terminus
sp_v3.0_unigene101848 SustainPine v3.0 552
AutoFact: Polyprotein n=1 Tax=Drosophila melanogaster RepID=B6V6Z8_DROME 4.99997e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.622e-17
Internal
sp_v3.0_unigene103065 SustainPine v3.0 495
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 5.363e-35
Internal
sp_v3.0_unigene103270 SustainPine v3.0 430
AutoFact: pfam12738, PTCB-BRCT, twin BRCT domain 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene103358 SustainPine v3.0 667
AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 5.419e-26
Putative C-terminus
sp_v3.0_unigene103557 SustainPine v3.0 484
AutoFact: topoisomerase (DNA) II binding protein 1 [Arabidopsis thaliana] gb|AEE35963.1| topoisomerase (DNA) II binding protein 1 [Arabidopsis thaliana] 9.0e-21
FL-Next: tr=Topbp1, putative; Ricinus communis (Castor bean). 0.0
Sma3: Topbp1, putative 6.823e-06
Internal
sp_v3.0_unigene104264 SustainPine v3.0 560
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 6.614e-19
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain