Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1 SustainPine v3.0 4527
AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene56 SustainPine v3.0 2179
AutoFact: Gag/pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9C5V1_ARATH 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.569e-23
C-terminus
sp_v3.0_unigene58 SustainPine v3.0 4280
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative polyprotein 6.696e-12
Complete
sp_v3.0_unigene59 SustainPine v3.0 2834
AutoFact: rve domain containing protein 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene187 SustainPine v3.0 1196
AutoFact: oligoribonuclease [Arabidopsis thaliana] dbj|BAH19818.1| AT2G26970 [Arabidopsis thaliana] gb|AEC07913.1| oligoribonuclease [Arabidopsis thaliana] 0.0
FL-Next: sp=Oligoribonuclease; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Oligoribonuclease 2.166e-09
Complete
sp_v3.0_unigene217 SustainPine v3.0 1610
AutoFact: putative protein kinase [Arabidopsis thaliana] 0.0
FL-Next: tr=Receptor protein kinase; Pinus sylvestris (Scots pine). 0.0
Sma3: Leucine-rich repeat receptor-like protein kinase 1.808e-29
Putative C-terminus
sp_v3.0_unigene248 SustainPine v3.0 4442
AutoFact: protein kinase domain-containing protein [Arabidopsis thaliana] gb|AEE35463.1| protein kinase domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene422 SustainPine v3.0 1706
AutoFact: Exostosin family protein [Arabidopsis thaliana] emb|CAB37544.1| putative protein [Arabidopsis thaliana] emb|CAB80469.1| putative protein [Arabidopsis thaliana] gb|AAK93666.1| unknown protein [Arabidopsis thaliana] gb|AAM45007.1| unknown protein [Arabidops 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Exostosin-like 1.453e-07
Putative Complete
sp_v3.0_unigene538 SustainPine v3.0 1893
AutoFact: vesicle-associated membrane protein-associated protein [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vesicle-associated membrane protein, putative 2.807e-15
Complete
sp_v3.0_unigene560 SustainPine v3.0 2467
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 9.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: YA5 4.993e-08
Complete
sp_v3.0_unigene681 SustainPine v3.0 1639
AutoFact: RVT_2 domain containing protein 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.754e-19
C-terminus
sp_v3.0_unigene748 SustainPine v3.0 1840
AutoFact: UDP-glucose dehydrogenase n=3 Tax=Oryza sativa RepID=Q75GS4_ORYSJ 0.0
FL-Next: sp=UDP-glucose 6-dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: UDP-glucose dehydrogenase 1.363e-31
Complete
sp_v3.0_unigene859 SustainPine v3.0 1818
AutoFact: oligoribonuclease [Arabidopsis thaliana] sp|Q9ZVE0.2|ORN_ARATH RecName: Full=Oligoribonuclease gb|AAL36387.1| unknown protein [Arabidopsis thaliana] gb|AAN71962.1| unknown protein [Arabidopsis thaliana] gb|AEC07912.1| oligoribonuclease [Arabidopsis thalia 0.0
FL-Next: sp=Oligoribonuclease; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Oligoribonuclease 2.166e-09
Complete
sp_v3.0_unigene1223 SustainPine v3.0 3924
AutoFact: Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9T173_RICCO 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Receptor protein kinase CLAVATA1, putative 3.805e-11
Complete
sp_v3.0_unigene1225 SustainPine v3.0 2360
AutoFact: PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Vitis vinifera RepID=UPI000198569A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.554e-35
Putative Complete
sp_v3.0_unigene1431 SustainPine v3.0 7160
AutoFact: gag-pol polyprotein [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative gag-pol polyprotein 2.535e-09
Complete
sp_v3.0_unigene2916 SustainPine v3.0 379
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 3.0e-32
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Reverse transcriptase 7.098e-36
Internal
sp_v3.0_unigene2970 SustainPine v3.0 2989
AutoFact: [C] COG0584 Glycerophosphoryl diester phosphodiesterase 9.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycerophosphoryl diester phosphodiesterase 2-like protein 6.348e-08
Complete
sp_v3.0_unigene3074 SustainPine v3.0 1955
AutoFact: glycerol-3-phosphate acyltransferase 6 [Arabidopsis thaliana] sp|O80437.1|GPAT6_ARATH RecName: Full=Glycerol-3-phosphate acyltransferase 6; Short=AtGPAT6 gb|AAC27160.1| unknown protein [Arabidopsis thaliana] gb|AAL32799.1| Unknown protein [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ER glycerol-phosphate acyltransferase 4.969e-22
Complete
sp_v3.0_unigene3249 SustainPine v3.0 1155
AutoFact: Ferritin n=1 Tax=Picea sitchensis RepID=C0PRI0_PICSI 0.0
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain