Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene27595 SustainPine v3.0 910
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.211e-19
Complete
sp_v3.0_unigene27790 SustainPine v3.0 737
AutoFact: Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SS80_RICCO 1.0e-28
FL-Next: tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
Sma3: Serine-threonine protein kinase, plant-type, putative 6.114e-14
N-terminus
sp_v3.0_unigene27902 SustainPine v3.0 810
AutoFact: Receptor-like protein kinase 3 n=2 Tax=Glycine max RepID=Q9LKZ4_SOYBN 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Leucine-rich repeat receptor-like protein kinase 8.401e-20
C-terminus
sp_v3.0_unigene27911 SustainPine v3.0 4761
AutoFact: RecName: Full=Serine/threonine-protein kinase Nek5; AltName: Full=NimA-related protein kinase 5; AltName: Full=OsNek5 dbj|BAB63817.1| putative LSTK-1-like kinase [Oryza sativa Japonica Group] dbj|BAC01197.1| putative LSTK-1-like kinase [Oryza sativa Japon 0.0
FL-Next: sp=Serine/threonine-protein kinase Nek5; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Serine/threonine-protein kinase Nek4 3.12e-11
Complete
sp_v3.0_unigene28269 SustainPine v3.0 1372
AutoFact: Glycerophosphoryl diester phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9SSQ8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycerophosphoryl diester phosphodiesterase, putative 2.004e-07
Putative Complete
sp_v3.0_unigene28339 SustainPine v3.0 958
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_89.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SMT7_VITVI 0.0
FL-Next: sp=Reticuline oxidase-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Reticuline oxidase, putative 3.063e-30
Putative C-terminus
sp_v3.0_unigene28732 SustainPine v3.0 1018
AutoFact: HAT family dimerisation domain containing protein n=2 Tax=Oryza sativa RepID=Q2R1C3_ORYSJ 5.60519e-45
FL-Next: tr=Uncharacterized protein; Oryza glaberrima (African rice). 0.0
Putative N-terminus
sp_v3.0_unigene29396 SustainPine v3.0 1253
AutoFact: Mutant gag-pol polyprotein n=2 Tax=Pisum sativum RepID=E7BQD6_PEA 1.0e-27
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 2.52e-36
Putative N-terminus
sp_v3.0_unigene29518 SustainPine v3.0 1206
AutoFact: Dimer_Tnp_hAT domain containing protein 1.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene29812 SustainPine v3.0 848
AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVQ8_9POAL 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene30279 SustainPine v3.0 558
AutoFact: gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana] dbj|BAB03109.1| retroelement pol polyprotein [Arabidopsis thaliana] 5.0e-37
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Retrotransposon protein, putative, unclassified 7.425e-17
Internal
sp_v3.0_unigene30541 SustainPine v3.0 1255
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 1.96182e-44
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Copia-type polyprotein 9.491e-11
C-terminus
sp_v3.0_unigene31259 SustainPine v3.0 1398
AutoFact: rve domain containing protein 5.0e-22
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative Complete
sp_v3.0_unigene31478 SustainPine v3.0 1493
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 2.52e-10
Putative Complete
sp_v3.0_unigene32054 SustainPine v3.0 397
AutoFact: Polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3X6_SOLDE 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene32057 SustainPine v3.0 779
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.716e-24
Internal
sp_v3.0_unigene32066 SustainPine v3.0 559
AutoFact: Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9RAH1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cytochrome P450 9.095e-24
C-terminus
sp_v3.0_unigene32634 SustainPine v3.0 515
AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene33049 SustainPine v3.0 854
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.447e-16
C-terminus
sp_v3.0_unigene33530 SustainPine v3.0 1158
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, unclassified 2.055e-18
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain