Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene22092 SustainPine v3.0 847
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=16 Tax=Magnoliophyta RepID=Q7XG23_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Gag-Pol polyprotein 1.126e-11
Internal
sp_v3.0_unigene22123 SustainPine v3.0 3848
AutoFact: pfam00665, rve, Integrase core domain 1.0e-21
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Complete
sp_v3.0_unigene22130 SustainPine v3.0 564
AutoFact: Cytochrome P450 78A4 n=1 Tax=Pinus radiata RepID=C78A4_PINRA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cytochrome P450 1.109e-23
C-terminus
sp_v3.0_unigene22188 SustainPine v3.0 453
AutoFact: Elicitor-inducible LRR receptor-like protein EILP n=1 Tax=Nicotiana tabacum RepID=Q9SLS3_TOBAC 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine-threonine protein kinase, plant-type, putative 1.25e-14
Internal
sp_v3.0_unigene22672 SustainPine v3.0 1116
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 4.367e-11
N-terminus
sp_v3.0_unigene22854 SustainPine v3.0 3856
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene22997 SustainPine v3.0 687
AutoFact: Beta-galactosidase n=1 Tax=Raphanus sativus RepID=Q6L619_RAPSA 0.0
FL-Next: sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-galactosidase 0.0
N-terminus
sp_v3.0_unigene23632 SustainPine v3.0 482
AutoFact: FK506-binding protein 2 n=1 Tax=Yarrowia lipolytica CLIB122 RepID=FKBP2_YARLI 3.0e-34
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase, FKBP-type 1.385e-18
Putative Complete
sp_v3.0_unigene24282 SustainPine v3.0 380
AutoFact: putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group] 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative disease resistance protein 1.356e-09
Internal
sp_v3.0_unigene24325 SustainPine v3.0 1171
AutoFact: DUF150 domain containing protein 9.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene24552 SustainPine v3.0 548
AutoFact: Ferritin n=1 Tax=Branchiostoma belcheri tsingtauense RepID=Q6WNW7_BRABE 0.0
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
Putative C-terminus
sp_v3.0_unigene24578 SustainPine v3.0 447
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 7.0e-40
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.873e-17
C-terminus
sp_v3.0_unigene25004 SustainPine v3.0 296
AutoFact: F20P5.25 protein n=1 Tax=Arabidopsis thaliana RepID=O04543_ARATH 5.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: F20P5.25 protein 4.386e-06
N-terminus
sp_v3.0_unigene25063 SustainPine v3.0 308
AutoFact: Retrotransposon protein, putative, Ty3-gypsy sub-class n=2 Tax=Oryza sativa Japonica Group RepID=Q53KQ8_ORYSJ 1.0e-20
FL-Next: tr=OSJNBa0074B10.8 protein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.656e-29
Internal
sp_v3.0_unigene25256 SustainPine v3.0 1872
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 5.0e-40
FL-Next: sp=Nuclear transcription factor Y subunit A-7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Nuclear transcription factor Y subunit A-3 1.432e-16
Complete
sp_v3.0_unigene25292 SustainPine v3.0 150
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 5.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene25509 SustainPine v3.0 250
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Orobanche cernua var. cumana RepID=Q27U10_OROCE 2.0e-15
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 0.0
C-terminus
sp_v3.0_unigene25950 SustainPine v3.0 447
AutoFact: Os06g0493000 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q0DC29_ORYSJ 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene26875 SustainPine v3.0 277
AutoFact: Retrotransposon protein n=1 Tax=Beta vulgaris RepID=A2I5E5_BETVU 5.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 7.13e-37
Putative Complete
sp_v3.0_unigene27091 SustainPine v3.0 469
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 1.0e-19
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain