Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene12783 SustainPine v3.0 1093
AutoFact: [Q] COG2124 Cytochrome P450 3.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Flavonoid 3',5'-hydroxylase 3.55e-25
C-terminus
sp_v3.0_unigene13239 SustainPine v3.0 815
AutoFact: Gag and Pol n=1 Tax=Zea mays RepID=Q8LSK0_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
N-terminus
sp_v3.0_unigene13909 SustainPine v3.0 1251
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SNW7_RICCO 0.0
FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene13963 SustainPine v3.0 1166
AutoFact: Putative auxin response factor 6 n=1 Tax=Amborella trichopoda RepID=E0WD84_AMBTC 0.0
FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
Sma3: Auxin response factor, putative 3.37601e-41
Misassembled
sp_v3.0_unigene13971 SustainPine v3.0 906
AutoFact: Amino acid transport protein AAT1 n=3 Tax=Arabidopsis RepID=Q84MA5_ARATH 0.0
FL-Next: sp=Cationic amino acid transporter 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Cationic amino acid transporter, putative 1.723e-27
Internal
sp_v3.0_unigene14220 SustainPine v3.0 903
AutoFact: nucleoporin 155 [Arabidopsis thaliana] gb|AEE29235.1| nucleoporin 155 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene14285 SustainPine v3.0 2079
AutoFact: vesicle-associated membrane protein-associated protein [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vesicle-associated membrane protein, putative 2.807e-15
Complete
sp_v3.0_unigene14301 SustainPine v3.0 384
AutoFact: Unassigned protein
FL-Next: tr=Cell wall-associated hydrolase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
C-terminus
sp_v3.0_unigene14403 SustainPine v3.0 643
AutoFact: serine/threonine-protein kinase Nek5 [Arabidopsis thaliana] sp|Q0WPH8.1|NEK5_ARATH RecName: Full=Serine/threonine-protein kinase Nek5; AltName: Full=NimA-related protein kinase 5; Short=AtNEK6; Short=AtNek5 dbj|BAF00971.1| protein kinase like protein [Ara 4.0e-28
FL-Next: sp=Serine/threonine-protein kinase Nek5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Serine/threonine-protein kinase Nek4 2.513e-11
N-terminus
sp_v3.0_unigene14896 SustainPine v3.0 293
AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Peperomia caperata RepID=Q56GE9_PEPCA 3.0e-32
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 0.0
Putative N-terminus
sp_v3.0_unigene15050 SustainPine v3.0 1401
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] gb|ABF96565.1| CCAAT-box transcription factor complex WHAP3, putative, expressed [Oryza sativa Japonica Group] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear transcription factor Y subunit A-7 2.159e-08
N-terminus
sp_v3.0_unigene15185 SustainPine v3.0 1660
AutoFact: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9REC4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative serine/threonine kinase 3.681e-06
Putative C-terminus
sp_v3.0_unigene15477 SustainPine v3.0 618
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 3.0e-30
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.637e-14
Putative Complete
sp_v3.0_unigene15486 SustainPine v3.0 523
AutoFact: Os07g0121200 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q0D8X3_ORYSJ 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Leucine Rich Repeat, putative 1.736e-07
Internal
sp_v3.0_unigene15707 SustainPine v3.0 1580
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 9.80909e-45
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Copia-type polyprotein 1.613e-10
C-terminus
sp_v3.0_unigene15965 SustainPine v3.0 1028
AutoFact: Dimer_Tnp_hAT domain containing protein 1.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene16212 SustainPine v3.0 2300
AutoFact: putative glycerophosphoryl diester phosphodiesterase 1 [Arabidopsis thaliana] sp|Q9FJ62.1|GLPQ1_ARATH RecName: Full=Probable glycerophosphoryl diester phosphodiesterase 1; Flags: Precursor dbj|BAB08565.1| unnamed protein product [Arabidopsis thaliana] gb| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycerophosphoryl diester phosphodiesterase, putative 1.908e-07
C-terminus
sp_v3.0_unigene16392 SustainPine v3.0 553
AutoFact: cytochrome p450-dependent monooxygenase [Brassica napus] 9.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cytochrome P450 1.035e-20
C-terminus
sp_v3.0_unigene16526 SustainPine v3.0 737
AutoFact: RecName: Full=Cytochrome P450 704C1; AltName: Full=Cytochrome P450 CYPD gb|AAX07434.1| cytochrome P450 CYPD [Pinus taeda] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cytochrome P450 7.204e-23
C-terminus
sp_v3.0_unigene16623 SustainPine v3.0 797
AutoFact: Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SCQ6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cytochrome P450 1.339e-23
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain